Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2354 ATGGACATAATCATGGACACCATGATGGACGACCCTGATTTCCTCGACTTCTCCGACCACAGCACCACCACCCCCACCTCCGACGAAGACTGGAACCTCTGGTCCCCTCTCGTCGACTTGGAATCCTTCGCCGCCGACCAACACGATTTCCACACCCTCATCGACGACGCCGTCGTTCTGACCCCAGATCAAGGCGCCGCCGAAGAATCCGACTCAACCGGCGGCGACGCTTGCGACGACGAGAAGGGCCTCCGCCTGGTGCACCTCCTGATGGCGACGGCGGAGGCCCTCACCGCCGGCACCGAGAGCCTCGACCTGGCTCGAGCGATATTGGTTCGGCTCAACGAGTTGGTGTCCCCCACCCACGGCACCAACATCGAAAGACTCGCGGCGCATTTTAGCCACGCCCTCCACCACCTGCTAGACGGCTCCGCCAGTGCGCACACCACCACCGATCACCCCCACATTACAGACATGCTCCTCGCCTTCCAGCTTCTCCAGGACATGTCCCCTTCCGTCAAGTTCGCGCACTTCACCGCCAACCAGGCCATCCTAGAGGCCGTGGCCCACGAAAAACGGGTCCACATCGTCGACTTCGACGTCACCGAAGGGGCCCAATGGGCCTCCCTCATTCAGGCCCTctcttcaaaaaacaaaaacctccCGGGCCCGCACCTCCGCCTCACCGCATTGTCCAGAGGCGGCGCCGCCGGACGGAGATCCATCGCCACCGTTCAGGAAACCGGACGGAGGCTAACGGCGTTTGCGGCTTCCGTTGGACAACCGTTTTCGTTTCACCAGTGTCGGTTAGACCCTGACGAAACGTTTCGACCTTCTTCTCTGAAACTCGTTCGCGGCGAGGTATTGGTGTTTAACTGCATGCTGCACCTGCCGCACCTAGGCTTCCGAGCCTCAGGTTCGGTTGCTTCGTTTTTAAAAGGCGCGAAGGAGCTGAACCTGGGGCTGGTGATGCTTGTGGAGGAAGAGGTGGCGCGTGTTGGGGACGCGGGCTTTGTGGGCCTGTTTATGGATTTGCTGCACCACTACTCGGCGGTGTTTGATTCGCTCGAGGTTGGGTTTCCCATGCAGAGATGGGCCCGGGCTTTGGTGGAGAAAGTGTTTTTGGGCCCGCGAATAGCGGACTCGGTGGCCCGGATGTACCGGagtgaggaggaggaggaggaggaggagagagGGTCGTGGGGGGAGTGGTTGGGTGCGGCGGGGTTCAGGGGAGTTCCCGTAAGCTTCGCGAACCATTGCCAAGCGAATCTGTTGCTGGGACTGTTTAACGATGGGTATAGGGTGGAGGAGTTGGGGAACAATAGGTTGGTGTTGGGTTGGAAATCACGGCGTTTGCTTTCGGCCTCTGTTTGGACTTCAGGCTCTTGA 1392 0.5805 MDIIMDTMMDDPDFLDFSDHSTTTPTSDEDWNLWSPLVDLESFAADQHDFHTLIDDAVVLTPDQGAAEESDSTGGDACDDEKGLRLVHLLMATAEALTAGTESLDLARAILVRLNELVSPTHGTNIERLAAHFSHALHHLLDGSASAHTTTDHPHITDMLLAFQLLQDMSPSVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLIQALSSKNKNLPGPHLRLTALSRGGAAGRRSIATVQETGRRLTAFAASVGQPFSFHQCRLDPDETFRPSSLKLVRGEVLVFNCMLHLPHLGFRASGSVASFLKGAKELNLGLVMLVEEEVARVGDAGFVGLFMDLLHHYSAVFDSLEVGFPMQRWARALVEKVFLGPRIADSVARMYRSEEEEEEEERGSWGEWLGAAGFRGVPVSFANHCQANLLLGLFNDGYRVEELGNNRLVLGWKSRRLLSASVWTSGS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2354 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 72 460 IPR005202 -
Ssu6g2354 463 Pfam GRAS domain family 86 460 IPR005202 -
Ssu6g2354 463 PANTHER SCARECROW-LIKE PROTEIN 26 72 460 IPR030028 -
Ssu6g2354 463 ProSiteProfiles GRAS family profile. 77 460 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2354 Ssu-Chr6 53811225 53812616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2354 79 463 GRAS Transcription Factor Family AT3G54220 35.949 1.06e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g2354 GRAS 7.4e-97 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2354 - - pvu:PHAVU_008G165200g 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2354 6 53811225 53812616 Ssu6g2354 6 53811225 53812616 ECH