Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2351 ATGCCGGTGAACCGTGGCCAAGGCCAAACCACAAGGTGGTATCAGCTATGCTTTTTTCCCACTAGTCCAGACAGTACAGATGATTCAGACATAGAATCTGTAGTCCTACCTCTTGGTACTCCAACCCCATCTAGTAGTACATGGCAAGAAATTtctacaccaccaccacccccacccccaccgccaccaccaccaccactgccgcCACCAAACCTAGAACCTGAACTTGATTGGAGTTTTCCGCTGCCACCGCCGCTTCTGCCGCCAGTTATTTTTTCTCCTGCGCTGCCTCTGCAACAGGCTACAACACTCAACATTCAATTACATGATAGACATCAACCTCCCAGTCCAAGTCACGCGTTTGAAGGTGATCAAAGTGAGTGCACAATGGATGTCATGAATTGCATTAGCAGGGTGAGAGTCTCAGAGATGGATAAACTCTCTTACTGTCCCATTTGCTTGGAGGAGTTTAAAGTGGGTGACCAAGCATGCCGGTTACCCTGCAACCACACCTACTGTTCTGAATGCATTCTTCGTTGgcttaacaacaacaaaacatgtcCTGTTTGCAGGCTTCAGTTGGATGGTTGTGCCCTTCCCGATGTACCAGGTATAGAGAATAGTGTAGGTGGTAACTCAGATGAAGCTGATTATGATAGTGCATGTGATGAGCTTGGTGATTCTCATGAAGATGGTGCTTCTCAGAGTGCTCTTGCTCCACTAACTTAA 729 0.4184 MPVNRGQGQTTRWYQLCFFPTSPDSTDDSDIESVVLPLGTPTPSSSTWQEISTPPPPPPPPPPPPPLPPPNLEPELDWSFPLPPPLLPPVIFSPALPLQQATTLNIQLHDRHQPPSPSHAFEGDQSECTMDVMNCISRVRVSEMDKLSYCPICLEEFKVGDQACRLPCNHTYCSECILRWLNNNKTCPVCRLQLDGCALPDVPGIENSVGGNSDEADYDSACDELGDSHEDGASQSALAPLT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2351 242 MobiDBLite consensus disorder prediction 208 242 - -
Ssu6g2351 242 Pfam Ring finger domain 149 191 IPR001841 -
Ssu6g2351 242 ProSiteProfiles Zinc finger RING-type profile. 150 191 IPR001841 -
Ssu6g2351 242 SMART ring_2 150 190 IPR001841 -
Ssu6g2351 242 MobiDBLite consensus disorder prediction 50 77 - -
Ssu6g2351 242 ProSitePatterns Zinc finger RING-type signature. 168 177 IPR017907 -
Ssu6g2351 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 196 IPR013083 -
Ssu6g2351 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 126 194 - -
Ssu6g2351 242 SUPERFAMILY RING/U-box 138 194 - -
Ssu6g2351 242 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 126 194 - -
Ssu6g2351 242 Coils Coil 242 242 - -
Ssu6g2351 242 MobiDBLite consensus disorder prediction 20 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2351 Ssu-Chr6 53707087 53707973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2351 150 206 C3H Transcription Factor Family AT2G44330 45.614 3.39e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2351 K11982 - ccaj:109817940 295.819