Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2349 ATGGTTAAGCCAGAGAACAAGATCCACACAGAGGCATCAAAGCCAATGAGACCTTTATCTTCCTCATCACCAGCAGCATCAAGTGACAACAAAAAGAAGTACAAGGGAGTCAGAATGAGAAGCTGGGGCTCATGGGTGTCAGAGATTAGAGCACCAAACCAAAAAACAAGAATATGGTTGGGATCTTATTCAACTGCAGAGGCAGCAGCCAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCAGCCAACCTCAACTTCCCTTTAAGTTCTTCACACTACATTCCTCAAGACACTGTCATGTccccaaaatcaatccaaaGAGTGGCTGCTGCTGCTGCCAACAGTTTTATGGACAATAATACTATTGCTATTGCCACCACCCCACCCTCTCCACCTTCTCCTCCACCTGCTTCAATCTCTTCCTCTTCATTGGTCTCATCCCCATCAATTGCATCATCTCCCTCAGACCAAATTGATGATGATGTCTCACTTCTTTCACCATTTGGGGCCTACACTCCTACTAGCTGTGATCAAGCACATGAATCAATGGCTATGATGGAATCTTGGTATGGCTTGGAGGGCTTGCATTCCCCAAAGTATGTTGATCAAATGCTAAGTGGGGCATTCTTTGACATTGATTCAACACACTTGCTTGATGATCTGTATGAAGAAAGTGACATCCGTTTGTGGAGTTTCTGCTGA 711 0.4402 MVKPENKIHTEASKPMRPLSSSSPAASSDNKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPLSSSHYIPQDTVMSPKSIQRVAAAAANSFMDNNTIAIATTPPSPPSPPPASISSSSLVSSPSIASSPSDQIDDDVSLLSPFGAYTPTSCDQAHESMAMMESWYGLEGLHSPKYVDQMLSGAFFDIDSTHLLDDLYEESDIRLWSFC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2349 236 MobiDBLite consensus disorder prediction 1 35 - -
Ssu6g2349 236 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Ssu6g2349 236 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Ssu6g2349 236 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677
Ssu6g2349 236 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Ssu6g2349 236 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Ssu6g2349 236 MobiDBLite consensus disorder prediction 142 160 - -
Ssu6g2349 236 MobiDBLite consensus disorder prediction 125 160 - -
Ssu6g2349 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 236 - -
Ssu6g2349 236 MobiDBLite consensus disorder prediction 15 29 - -
Ssu6g2349 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 12 236 - -
Ssu6g2349 236 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Ssu6g2349 236 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Ssu6g2349 236 Gene3D AP2/ERF domain 32 92 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2349 Ssu-Chr6 53668433 53669143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2349 1 235 AP2-EREBP Transcription Factor Family AT1G21910 45.349 1.89e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g2349 AP2 4.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2349 - - gmx:100813313 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2349 6 53668433 53669143 Ssu6g2349 6 53668433 53669143 ECH