Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2344 ATGTTTCTAACTTCAAATAAAGAGCagctaaaattgaaaaatcaagcATTTTCTTACTCAGAGGTTCTTAGTGTTACTGATGGTTTCAAAACAATGATTGGAAAAGGTGGATTTGGTGAGGTTTACCTTGGTACTCTACAAAGTGGCAAAAGAGTTGCCGTGAAGACACTTTCTTTATCATCAAAGCAAGGGTATGAGGAGTTCAATTCAGAGGCAAAATTCTTGACCCTTGTTCATCATGGAAATGTGGTTTCTCTTGTGGGGTACTGTGACGAAGGTGACACTAAAGCACTTATTTATGAATATCTCCCTGAAGGGAACCTCAAAGAACAGTTGTCAGATAAAAACCCAAAAGTCTTGGGATGGAATGAGAGACTTCAAATTGCCGTAGATGCAGCAAATGGATTGGATTATCTGCATAATGGATGCAAGCCGCCTATAATTCACAGAGATTTCAAAAGTTCCAACATCTTATTCGATGAAAACATGCATGCCAAGATTTCAGACTTTGGACTGTCTAGAGCTTTTGCAAATGACAATGACACTCATGTCTCAACTAATTACCCAGTTGGCACACCGGGTTACCTTGATCCTGAATATCACTCCTCAGGGACTCTCAATAAAAGGGGTGATGTTTACAATTTTGGGGTAGTTTTACTGGAACTAATTACAGGTCAACCAGCAATAAGAGGAGCTCCTGATAGACCTAGTCACATACATTCTTGGGTTAAACTCATACTTCAAACTGCAGATATCCAAGCAATAGTTGATCCAAGATTACGAGGCAATTACCATGCTGCTTCAGCTTGGAAATTTTTAGAGGTAGCCATGTCTTGCCTCCCTGATCTTGCCATCCAAAGGCCTGACATAAGCCACATAACCTCAGAACTAAAGGATTGTTTGTCTTTGGAAATATCCCTTGAAGTGAGAAACAAGAAAGATTCATTCCTTATGGATTCTCTGCAGATTGATTTCAATGAATCGGATATAAGTCCAAATCCTAGGTAG 1008 0.3879 MFLTSNKEQLKLKNQAFSYSEVLSVTDGFKTMIGKGGFGEVYLGTLQSGKRVAVKTLSLSSKQGYEEFNSEAKFLTLVHHGNVVSLVGYCDEGDTKALIYEYLPEGNLKEQLSDKNPKVLGWNERLQIAVDAANGLDYLHNGCKPPIIHRDFKSSNILFDENMHAKISDFGLSRAFANDNDTHVSTNYPVGTPGYLDPEYHSSGTLNKRGDVYNFGVVLLELITGQPAIRGAPDRPSHIHSWVKLILQTADIQAIVDPRLRGNYHAASAWKFLEVAMSCLPDLAIQRPDISHITSELKDCLSLEISLEVRNKKDSFLMDSLQIDFNESDISPNPR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2344 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Ssu6g2344 335 CDD STKc_IRAK 33 298 - -
Ssu6g2344 335 Gene3D Phosphorylase Kinase; domain 1 9 102 - -
Ssu6g2344 335 ProSiteProfiles Protein kinase domain profile. 27 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2344 335 Pfam Protein tyrosine and serine/threonine kinase 30 296 IPR001245 GO:0004672|GO:0006468
Ssu6g2344 335 PANTHER RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN, PUTATIVE-RELATED 5 314 - -
Ssu6g2344 335 SUPERFAMILY Protein kinase-like (PK-like) 13 296 IPR011009 -
Ssu6g2344 335 Gene3D Transferase(Phosphotransferase) domain 1 103 321 - -
Ssu6g2344 335 ProSitePatterns Protein kinases ATP-binding region signature. 33 55 IPR017441 GO:0005524
Ssu6g2344 335 PANTHER OS07G0107800 PROTEIN-RELATED 5 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2344 Ssu-Chr6 53559175 53564218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2344 13 301 Receptor kinase-like Gene Family AT2G28970 53.793 3.10e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Ssu6g2344 PK_Tyr_Ser-Thr 5.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2344 - - vra:106763618 555.829