Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2343 ATGGAGAGAGAATTGCGATGGATTCTGGTTTTAGCAGTTTGCGCTTCATCAGTCATTAATATTCTTGCGGAGAACAATGAACGGGCTGACAGGAAGCTTGCCAATATTGATTATTCAGGTGTTATAAGCATTGATTGTGGGGTAAACGAGGGCTACACTGACAAGACGACCAACCTGCGGTATCAAGCAGATGATATCCAATTTGGTGAAATTTATAACAAATCCTCGATTTACCACTTTGACAATGTAAGTCAGATTCAAAAGCAGCTGAACACGTTGAGAAGTTTCCCTTATGGGAAGCGGAATTGCTATACCTTGACACCCAAACAGGGaatgaaccaaaaatatattatcaggGCTTACTTTGCATATGGAAACTATGACAACAAGGATAAACCGCCAATTTTTGATTTACATCTTGGCGTCAATTTCTTCAAGACAATAAACTTGACTGAGGCTGATAAGGTTGTCCGAATCGAAGCTATTCATTTTGCCTCAACAGACACAATTGATTTCTGTCTTGTAAACATCGACCAAGGGGTAcctttcatttcattattgGAACTATGGCCTTTGGAAAATTCAATTTATCGAAGTTCGTCCAGTTTATTAACGCTAGATCTCCTCACACGAATTAACCTTGGTGCGTCAGAAGATAACAATTCCTTCATCAGGTACACGGATGATATATATGGAAGGTCTTGGGAAGTGCGAAACGATAATTACGAGAATCCAATGAAAACATCATCAGCTATTGATTTGGATAATCTTGTTGATCCTTACAAACTGCCTACAGAAGTTTTGAGCACTGCAGTGGAGGTGTTAAAGTCCGGTTCGTTGGAATTCACACAGAATTATAGCAAAGATTCTGAGTATTGTGTgtatcttcatttttttgacTTTAAGGATCGGGCAAATAAACAAAGACGgatattgaatattattattaatggtcttgatgatgatgataatgtcACACAACCCCTTACTCTTTCATACTGGAAGCCCAATAGCATAATTCTACCTATAAAACAAGGGATGGGAATTAACAAGATATTGATTGAAGCCACCTCTGATTCTGCCTTACCTGCCATGCTTAATGCTCTAGAGATTTACAGAGTAGTACCCCAGTTAGATTCTGCCACTCAACAAGAGGATGTTGATGCTATCTGGcacataaaagatttttataagaTCTCTAAAATGAATTGGCAAGGAGACCCCTGTGaaccaaataattttacatGGGAAGGTGTTACTTGCAGCAGTGGGGACACTCCAAGAATCATTTCATTAAACTTGAGCTCGAGCAAGTTGTCAGGCGAAATAGATGCTTCATTCTCCAACCTCACATATTTGGAGACTTTGGATTTGTCAAACAATGAATTGACAGGGGAGGTGccagaatttttttcaaaactactgCAACTAAAGATCCTTAATTTGTCCAGGAATATGCTCACAGGTTCCTTTCCTGAGAGTCTAAAGGCAAAGTCGTCAAACAACTCTTTGCAATTGAGTTTGGATGGAAATCTCTCTCCCTATCAAACAGGGTCATGCAAGAGCAACAAACAAAAGTTTATCATTCCATTAGTTGCATCTATAACAACATTTGTTGCAGTGGTCCTCATAATATCTATCATAGTTATGGTGATCCGGAGACttagaaaaaatggaaaagTGATTTCTTCAATTTCTGTCAAAGATGATCAACTGAAATCAACAAATCAAGTATTTTCTTACTCAGAGATTCTTAGAATCACTGAAAATTTCACAACAATGATTGGAAAAGGCGGATTTGGTAAGGTTTACCTAGGTACATTAGAGTGTGGCAAAAGAGTTGCCGTAAAGACACTTTCTTTGCCATCAGCACAAGGGTATAAAGAGTTTCAGTCAGAGGCAAAACTGCTGATGCATGTTCATCATAGAAACGTGGTTTCTCTTGTGGGGTACTGTGATGAAGGTGACACTAAAGCGCTTATTTATGAATATCTCCCAGAAGGGAACCTCCAACAGAAGTTGTCAGATAAAAACCCAAACTATTTGGAATGGATCCAAAGACTTAAAATCACTATGGATGCAGCAAATGGATTGGAGTATTTGCATAATGGATGTAAGCCACCCGTAATTCATAGAGATTTAAAAACATCCAACATCTTACTAGACGAAAATATGCATGCCAAGATTTCAGACTTTGGAGTGTCTAAAACTTTTGCAAACGACACTGACACTTATGTCACAACTTATCCAGCAGGCACACCAGGTTACGTTGATCCTGAATTTTATTGCTCTGGGACCCTCAATAAAAAGAGTGATGTTTATAGCTTTGGGATAATTCTACTAGAGCTAATCACTGGTCAGCCAGTACTAAGAGGGACTCCTGACAATCTCAGTTACATACTTCCTTGGGTTAATAATAAACTCAGAACCGGAGATATCCAAGAAATAGTTGATCCAAGGTTAGAAGGGAAATACAATGCTGCTTCAGCGTGGAAATTTATAGGGATAGCCATGTCCTGCCTTCCCCAAGTTCCAATTCACAGGCCTGACATTGGCCACATAGCCTCAGAACTAAAGGAGTGTTTGGCTCTGGAATTATCACTTGAAAGGACTGTGAGCAACGTGAGAGATTCGTTGGCCATGAGTTCTAGGCAGATTGAATTCCATTAA 2670 0.3723 MERELRWILVLAVCASSVINILAENNERADRKLANIDYSGVISIDCGVNEGYTDKTTNLRYQADDIQFGEIYNKSSIYHFDNVSQIQKQLNTLRSFPYGKRNCYTLTPKQGMNQKYIIRAYFAYGNYDNKDKPPIFDLHLGVNFFKTINLTEADKVVRIEAIHFASTDTIDFCLVNIDQGVPFISLLELWPLENSIYRSSSSLLTLDLLTRINLGASEDNNSFIRYTDDIYGRSWEVRNDNYENPMKTSSAIDLDNLVDPYKLPTEVLSTAVEVLKSGSLEFTQNYSKDSEYCVYLHFFDFKDRANKQRRILNIIINGLDDDDNVTQPLTLSYWKPNSIILPIKQGMGINKILIEATSDSALPAMLNALEIYRVVPQLDSATQQEDVDAIWHIKDFYKISKMNWQGDPCEPNNFTWEGVTCSSGDTPRIISLNLSSSKLSGEIDASFSNLTYLETLDLSNNELTGEVPEFFSKLLQLKILNLSRNMLTGSFPESLKAKSSNNSLQLSLDGNLSPYQTGSCKSNKQKFIIPLVASITTFVAVVLIISIIVMVIRRLRKNGKVISSISVKDDQLKSTNQVFSYSEILRITENFTTMIGKGGFGKVYLGTLECGKRVAVKTLSLPSAQGYKEFQSEAKLLMHVHHRNVVSLVGYCDEGDTKALIYEYLPEGNLQQKLSDKNPNYLEWIQRLKITMDAANGLEYLHNGCKPPVIHRDLKTSNILLDENMHAKISDFGVSKTFANDTDTYVTTYPAGTPGYVDPEFYCSGTLNKKSDVYSFGIILLELITGQPVLRGTPDNLSYILPWVNNKLRTGDIQEIVDPRLEGKYNAASAWKFIGIAMSCLPQVPIHRPDIGHIASELKECLALELSLERTVSNVRDSLAMSSRQIEFH 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2343 889 Pfam Leucine rich repeat 431 487 IPR001611 GO:0005515
Ssu6g2343 889 Pfam Protein tyrosine and serine/threonine kinase 591 801 IPR001245 GO:0004672|GO:0006468
Ssu6g2343 889 PRINTS Leucine-rich repeat signature 453 466 - -
Ssu6g2343 889 PRINTS Leucine-rich repeat signature 474 487 - -
Ssu6g2343 889 SMART serkin_6 589 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2343 889 Gene3D Phosphorylase Kinase; domain 1 571 664 - -
Ssu6g2343 889 ProSiteProfiles Protein kinase domain profile. 589 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2343 889 SUPERFAMILY Protein kinase-like (PK-like) 574 857 IPR011009 -
Ssu6g2343 889 Pfam Malectin-like domain 44 374 IPR024788 -
Ssu6g2343 889 Gene3D Ribonuclease Inhibitor 390 508 IPR032675 -
Ssu6g2343 889 SUPERFAMILY L domain-like 411 500 - -
Ssu6g2343 889 ProSitePatterns Protein kinases ATP-binding region signature. 595 617 IPR017441 GO:0005524
Ssu6g2343 889 Gene3D Transferase(Phosphotransferase) domain 1 665 877 - -
Ssu6g2343 889 PANTHER OS07G0107800 PROTEIN-RELATED 35 876 - -
Ssu6g2343 889 CDD STKc_IRAK 595 860 - -
Ssu6g2343 889 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
Ssu6g2343 889 PANTHER RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN, PUTATIVE-RELATED 35 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2343 Ssu-Chr6 53466225 53477415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2343 37 865 Receptor kinase-like Gene Family AT1G51880 41.793 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Ssu6g2343 Malectin_like 4.1e-78 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2343 - - vun:114194066 1065.45