Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2342 ATGGAAGAAATATGTGGTGCCAAAATTGGCAACATGGTCAATAAGGCCAAGCCATATGTTCTAACTGTGGGGTTGCAATTTGGGATGGCAGGGACATACCTCTTCACTATGGCTAGTCTGAATCATGGAATGAGTCGTTTGGTGTTCATTGTGTATCGCAATGCCATTGCTGCATTGGCCCTTGCTCCCTTTGCGTTGATCTTTGAAAGGAAAGTTAGGCCAAAGATGACATTCACTGTCTTCTTTCAGATACTAGCACTCGGATTTCTTGAgCCAGTGGTTGACCAAGGCTTCACTTTCTTGGGGATGCAATACACTTCGGCTTCCTTTGCGTCTGCTGTTATGAATGCCGTACCCTCTGTAACCTTTGTCCTTGCAGTAATTCTCAGGTTAGAGCGTGTAAAAATCAAGGAATTACGCAGTCAAGCGAAAGTGATCGGAACCTTGGTAACCTTTGTTGGAGCTTTAGTAATGACATTTTACAAAGGTCCTCAATTCGACCTATTTcatcatccaaacacaacccaCCAGCAAATTGGAAGTCACTCGCCTCAGAATCATTCCCACTGGCTCGCAGGGACTCTCTTCATATGCCTGGGTTGTCTGGCTTGGTCTTCCTTCTACATATTGCAGTCCATAACGGTGAAAAGGTACCCTGCGCAACTGTCACTGTCATCCTTGATATGCTTGATGGGTGCATTGCAAAGTGCCGTGGTTGCGCTGATTGCAGATCATAACCCTCGGGCATGGGCTATCGGTTTCGACTTCACGCTCTATGGCCCTCTATACACTgGAATAATGAGTTCCGGAATAGCATATTATATACAAGGGTTGGTAATGCAAAGCAGAGGCCCAGTGTTTGTAACATCCTTCAATCCTATATGCATGATCATTGTTACTGCTTTGGGCTCCCTCCTTCTAGGAGAACACCTCTACCTTGGAAGTATCATTGGAGGCATCGTTATTGCACTGGGTCTTTACTCTGTGGTGTGGGGTAAAGGTAAAGACTATGGAAATGGCACATCACcatcatcaacaacaaaagaaacagaAACGCTGCAGCTACCAATTACCTCgccaaataataaataa 1092 0.4295 MEEICGAKIGNMVNKAKPYVLTVGLQFGMAGTYLFTMASLNHGMSRLVFIVYRNAIAALALAPFALIFERKVRPKMTFTVFFQILALGFLEPVVDQGFTFLGMQYTSASFASAVMNAVPSVTFVLAVILRLERVKIKELRSQAKVIGTLVTFVGALVMTFYKGPQFDLFHHPNTTHQQIGSHSPQNHSHWLAGTLFICLGCLAWSSFYILQSITVKRYPAQLSLSSLICLMGALQSAVVALIADHNPRAWAIGFDFTLYGPLYTGIMSSGIAYYIQGLVMQSRGPVFVTSFNPICMIIVTALGSLLLGEHLYLGSIIGGIVIALGLYSVVWGKGKDYGNGTSPSSTTKETETLQLPITSPNNK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2342 363 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020|GO:0016021
Ssu6g2342 363 Pfam EamA-like transporter family 30 159 IPR000620 GO:0016020|GO:0016021
Ssu6g2342 363 PANTHER WAT1-RELATED PROTEIN 12 354 - -
Ssu6g2342 363 PANTHER WAT1-RELATED PROTEIN 12 354 IPR030184 GO:0016021|GO:0022857
Ssu6g2342 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 334 - -
Ssu6g2342 363 MobiDBLite consensus disorder prediction 340 363 - -
Ssu6g2342 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2342 Ssu-Chr6 53410726 53414924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2342 10 363 Nodulin-like Gene Family AT4G08300 47.472 8.40e-119 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2342 - - gmx:100777641 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2342 6 53410726 53414924 Ssu6g2342 6 53410726 53414924 ECH