Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2338 ATGGAGGATCAAAATGCATCCAATGGATTGGGCAAGGTGTTCCGCAAGGTTAAGCCTTACCTTGCTATCGTGTCCCTTCAGTTTGGTTACTCCGGAATGTACGTCATCACCATGGTTTCTTTCAAGCATGGCATGAGCCATTGGGTACTCTCGGTGTACCGTCATTTGGTTGCTACTCTCATCATGGCCCCTTTCGCATTTGTCCTTGAAAGAAAAATACGGCCAAAGATGACTCTCCCAGTGTTCCTGAGGCTAGCAGCTCTCGCTTTCCTTGAGCCAGTGCTTGATCAAAACTTGTACAACATAGGGATGAAGAACACCTCAACAACGTTTGCATCGGCCTCCATTAATATCCTCCCAGCCATTACTTTTATATTGGCACTCATTTGCAGGTTAGAGACAGTGAACTTTAGAAAAATACACAGTGTAGCCAAGGTAGTTGGAACCGCAGTAACAGTCTCAGGAGCCATGGTTATGACTTTGTACAAAGGCCAAGCCTTTCAGATCATAAAGGGACATGCACCAAGCCAGCATGAAAGTGGCAGCAGCACAGAGCCCTCTGAACAACACTGGGTGCTTGGCACAGTAATGCTCATAGCAAGTTGTGGTGGTTGGGCTAGCTTCTTTATCTTGCAATCTTTCACTTTGAAGATGTACCCGGCAGAGCTCTCGGTTACAGCTTGGATTTGCTTTTTGGGCATTTTTGAGGGTGCAATTGCGACGCTTATATTTGAACGTGACATGAGCGTGTGGTCCATAGGCTTGGACTCAAGACTCCTTGCTTGTGTTTATTCTGGTGTGGTATGCTCTGGAATGGCATACTATGTACAAGGAGTTGTGACCAGAGAACGTGGACCTGTGTTTGTGACTTCTTTCAGCCCTCTATGTATGATTATCACTGCTGCATTGGGTTCCATTGTCTTGGCTGAGCAAGTTTATACGGGAAGTATAATTGGAGCTATTATCATTGTGACTGGACTTTACACCGTGGTATGGGGAAAAAGCAAAGACAGTCTGAACACAACGGACGCAGGAAGAAGTGAGGACCAAGAATTGCCAATTAAGGACGGTACAAAATCAGGATCAGACATTTTTGACAGTATTGAGATCAATGTTCCTACTGGGGCAGGGAAGAGTGTGCTTCCATCAGCAAGAACATAG 1161 0.4565 MEDQNASNGLGKVFRKVKPYLAIVSLQFGYSGMYVITMVSFKHGMSHWVLSVYRHLVATLIMAPFAFVLERKIRPKMTLPVFLRLAALAFLEPVLDQNLYNIGMKNTSTTFASASINILPAITFILALICRLETVNFRKIHSVAKVVGTAVTVSGAMVMTLYKGQAFQIIKGHAPSQHESGSSTEPSEQHWVLGTVMLIASCGGWASFFILQSFTLKMYPAELSVTAWICFLGIFEGAIATLIFERDMSVWSIGLDSRLLACVYSGVVCSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSIVLAEQVYTGSIIGAIIIVTGLYTVVWGKSKDSLNTTDAGRSEDQELPIKDGTKSGSDIFDSIEINVPTGAGKSVLPSART 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2338 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 335 - -
Ssu6g2338 386 PANTHER WAT1-RELATED PROTEIN 13 361 IPR030184 GO:0016021|GO:0022857
Ssu6g2338 386 MobiDBLite consensus disorder prediction 341 356 - -
Ssu6g2338 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
Ssu6g2338 386 Pfam EamA-like transporter family 31 150 IPR000620 GO:0016020|GO:0016021
Ssu6g2338 386 Pfam EamA-like transporter family 194 331 IPR000620 GO:0016020|GO:0016021
Ssu6g2338 386 PANTHER WAT1-RELATED PROTEIN 13 361 - -
Ssu6g2338 386 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2338 Ssu-Chr6 53232716 53236884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2338 11 364 Nodulin-like Gene Family AT1G44800 64.146 1.31e-167 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2338 - - gmx:100814921 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2338 6 53232716 53236884 Ssu6g2338 6 53232716 53236884 ECH