Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2334 ATGTTTGCAGGACGGAAAATACatccttttttttcattgtgGAAGGTGGAGAAGAAAAATCAGGAGCAGGAACGTGGTTTATCCGCGGCTAAGAGGGAAGGGGGAGGAATTACCTGTGGTCCTATCCATGTATTTGAAAATGTTCAGGATGATGCTTCACCCCTTGACTGGAGTGACTGGACATTTTTGGGGATGACCACTATAGCGGATTTAGGTCCAGGAAGTTCAAATTTATCTGCTTTGGAGGGTTCTGTTGAATCCttaaattttgataactttCCTAGTGCTTTAAATCGCTCAAGTGCTTCAATTTCTCAGAATGCCATGTCTTGCCCAAGTCAACTTTCTATACAGCCAGATAGTATGCTGGAAATATCACCACCAAACTCAGCTGTGCTAGCTAATGAGCAACCAGTATGTCCTTTGGAGCCAGAAGATGCCAAAgtgGACCTGGACTTGGAGTTGAATGAAGTCAATACTTTTTTGGGGCATACGGGCATTTTCAGAAAGTCAGATACTGAGCCACTGAGTAAATTTCTTCAAGAAAGTATGGGGTCTTACTACCATAGTTGTGAAGGTAAGGCTGAGGGCAGCTTATGGATACATAAGTACAAGCCAACAAAGGCCTTTGAGGTCTGTGGTAATGAAGGGGCTATGAATTTTTTGCGTGACTGGTTACATCTGTGGCATGAAAGACGTTATCAATGCAGAAAGGATTCCTCTAACAGGGATCGAGGTGACAGGCAAAATGATGACGATGCTGATTATATCTGTTCTGATAATGAGGAGGATTCCCTACAGAATGTTCTTTTGATTACAGGACCAACTGGGAGTGGCAAGTCTGCAGCTGTCTATGCTTGTGCCCAAGAGCAAGGGTTTAAGGTTTTAGAGCGCAGTGCATCAGATTGCCGAAATGGGGCTGCTGTCAAGCAATATTTTGGAGAGGCTCTTGAATCCCATGGGGTCAAAAGGTTATTGGATCACACTGTGAATTCACATAAGAAGAAAACTGTGAAGTTGCTTCCAGCTCCAGCTTTGCCTAATGGTATAGCAGCTGAGGAAATGGATGATGGGGTGATTGAACTGATAACCATTTCTGATGATGAAGCCCATAGTCTTGGTGGAGCATCTCCAAGGTTACATGACAAAAGTAATGTATTTACACGTGATAGTGTCCAAACTTTAATTCTGATTGAGGATGTAGACATCCTTTTCCCTGAAGATCGTGGATGTATTGCTGCCATACAACACATTTCTGAGACAGCAAAAGGGCCAATTATATTGACCAGCAATAgtAATAATGCTGGCCTACCAGATAGTTTTGCAAGACTACATGTTTCTTTCTCATTGCCATTGCCAGATGAGTTACTTTGCCATATGTACATGGTTTGTGTCACAGAAGAAGTCAACATCAATCCTCTTTTACTGAAAAAATTTGTCCAGTCTTGTGATGGAGATATTCGTAAAACCATTATGCAACTTCAGTTCTGGTTCCAGAgtgaaaaatatagaaaagACAGGAAACTGCAGAAGGTGTATGGCTCACTTCCTTTTGATCTTGAGGCTTGTCATCAGATAGTACCAAAGATACTACCCTGGAATTATCCCTCAGAGTTATCCAAACTAATTGAGAAGGAAGTTGCTAAGTCAATAACCATGATGGAGGAAACCTCATGCTTGCAGGGgttatttaataaagatttagacataaatgaaaggaaaaatgaTTTAGATGTGCAGTGTATGGAGACTGATTACTTAGAGGCCAGGGTAGAGAGGACCAAGAGATCTCTTATAGACTGCAGTGAGTTTGAAAGTCAACATAATGCTATTTCTGAGCTTTCAAATTGTTCTGGATGCCCAGTAACATCCTCTTGGCAAAAGAGTCAAAGTAAACTTATAGTGATGTCCTCTGATTCCGAGGTGAAGGATCCAAATAATGGACATGCTCTAGACGTTCATGATGAAGCTTACAAGAGACATTCCCTTGACAGCAACAGTGAATCTCCCTGTAAGTTTCAATGGAATCAAACCTACCCCAGCACATCATTTTGCAAACTGGTTTGTTCTGCTTTGAAAGATTCAGAGGAAGAACGGtataaatattatgatgcaTGCTTAAATGAAACACATAAATCATTTGATATATCCTGTTTTCCAGGATCAATATTTGTTCCTGAGACAGCAATTCAACATGGAATGAAGACAGTGTCTGGACCAGGGTCTTCTGGATGTAATGCTGGTCCGGTGGAAGTTTCTCTGAATAATGAGCTGACACCGTTCACTTTCAGTGTTAGTCAATGCTTAGCCAAATTGCCACAAAATTATGATTCATTGACAAATTCTGAAATTCCTATACCTTCTCCAAAAGTAGCTGTGCAAGATTGCAGAGATGAAAACACAGAAACCACAACTGTGTGTAATGTGATGTATGAGTGCAGTCATgctgattttaaattgaactcAAAGTATGTTGAGGCCAGTCCATCTATGGCAATGGATATGGTACAAAATTTTTGGAAGAAACTTCGTGTTTGTCGAAAGGATTTAGGACAGCATGCCAACCCAGAACAGCCAGGGTGTTATTCAAGTTGTTAA 2598 0.3953 MFAGRKIHPFFSLWKVEKKNQEQERGLSAAKREGGGITCGPIHVFENVQDDASPLDWSDWTFLGMTTIADLGPGSSNLSALEGSVESLNFDNFPSALNRSSASISQNAMSCPSQLSIQPDSMLEISPPNSAVLANEQPVCPLEPEDAKVDLDLELNEVNTFLGHTGIFRKSDTEPLSKFLQESMGSYYHSCEGKAEGSLWIHKYKPTKAFEVCGNEGAMNFLRDWLHLWHERRYQCRKDSSNRDRGDRQNDDDADYICSDNEEDSLQNVLLITGPTGSGKSAAVYACAQEQGFKVLERSASDCRNGAAVKQYFGEALESHGVKRLLDHTVNSHKKKTVKLLPAPALPNGIAAEEMDDGVIELITISDDEAHSLGGASPRLHDKSNVFTRDSVQTLILIEDVDILFPEDRGCIAAIQHISETAKGPIILTSNSNNAGLPDSFARLHVSFSLPLPDELLCHMYMVCVTEEVNINPLLLKKFVQSCDGDIRKTIMQLQFWFQSEKYRKDRKLQKVYGSLPFDLEACHQIVPKILPWNYPSELSKLIEKEVAKSITMMEETSCLQGLFNKDLDINERKNDLDVQCMETDYLEARVERTKRSLIDCSEFESQHNAISELSNCSGCPVTSSWQKSQSKLIVMSSDSEVKDPNNGHALDVHDEAYKRHSLDSNSESPCKFQWNQTYPSTSFCKLVCSALKDSEEERYKYYDACLNETHKSFDISCFPGSIFVPETAIQHGMKTVSGPGSSGCNAGPVEVSLNNELTPFTFSVSQCLAKLPQNYDSLTNSEIPIPSPKVAVQDCRDENTETTTVCNVMYECSHADFKLNSKYVEASPSMAMDMVQNFWKKLRVCRKDLGQHANPEQPGCYSSC 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2334 865 Coils Coil 13 33 - -
Ssu6g2334 865 CDD AAA 270 338 - -
Ssu6g2334 865 Gene3D - 197 448 IPR027417 -
Ssu6g2334 865 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 1 860 - -
Ssu6g2334 865 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 1 860 IPR004582 GO:0006281
Ssu6g2334 865 Gene3D - 451 513 - -
Ssu6g2334 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 505 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2334 Ssu-Chr6 53083966 53092682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2334 200 496 Core DNA Replication Machinery Family AT5G22010 21.070 2.78e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2334 - - gmx:100815984 1331.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2334 6 53083966 53092682 Ssu6g2334 6 53083966 53092682 ECH