Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2318 ATGAAAAGGAGAGCACTGGCTATTACCATTCTTCTGTTTCTACAAACTTGTGCTGCTGCCTCGCCTATCCACGATTGCCCTGCTTCCTCCTGCGGCGGCATTCCCAACATAAGTTATCCCTTTCGACTCAGAGGCGACCCACTCCGCTGCGGCGACAAGAGGTACGAACTGGTTTGCGAGAACAACGCAACAGTTTTGACTCTGTTTTCGGGGAAATACCATGTACGAGAAATCGATTACAGGAGACACAAAATCCGAGTGAGTGATGCGGGTGTCGTGGAGGACGCCGCTTGCTCCTTCTTCATGCCCCGCTATTTCTTATACTCTGGCAATTTCAGTGGCATCTATATGGGCCCTGGGCCGGATCCGCTAAACTTGGACGGATCTCAAGCGTCCGTAGCATATTTCAGCTGTACCGATCCAATCACCGACGATCCGAGATACGTTGCTGTGGAAACCACTGGTTGTGGCTCCGGAGGGCACGTGTATGCTGTGGTTAAGGATTCGAGAAATGATTTTGGCGTGAAGGACATCAAGGTCGGGTGCCAACTGAAGGTGGCTACTTTTGCACATTGGGGAACCGTCCAAGACCACAAATCCAGCGAGAAAGTTTCCTATGCCGATGTCCACAACATGCTCACGTACGGATTTGGGCTCTCTTGGTTGTATGTTGTTTGTGAAGATCGATGCGGAAAGGGGAAGGCTTGCCGTGTTGTCAATGAATCCACGGGTGAAGTCCAATGTGACCAGCAAGACTGCCGTTACGTCTACGAGGGCAACAACGTCACCTATGACTGCGgtgTTACGGGTGTACTAGACATAATTACTGCTATAAGTTTATATTGCATTGGTGTTTATAgagGATTGATGCAAAATTTTGGCTTGAACAAAGCTACAAGCTACGATGGTGATAGGGAAGTTGAAATAGGAAAAAGCATAGGAAGGTATATCCTACCATACtttataataagatttttatttggtGTGGTAGCTTTCGTTATGTTATTGATCTGTAAATGGGGAAGAAGACATAAATCAAAGTATGGAAATATTGAAGCTTTTCTACAAGGAAACACCCTCATGCCAATAAGATACtcatataaagaaataaagcacATGACTAGGGGTTTTAAGGAAAAGCTAGGTCAAGGAGGATTTGGCTTGGTATTCAAGGGAAAGTTACACAGTGGTTCATTTGCAGCGATAAAGATGTTGAGGAAATCAAAGGCTAATGGGGAAGAATTCATTAGTGAAGTTGCAACAATTGGAAGAATACATCATATGAATGTGGTACGACTTATTGGATTTTGTGTTGAAGCAACAAATCGTGCTCTTGTTTATGAATTCATGTCCAATGGATctcttgataaatatattttctccaaGCAAGATAGTATCTCTTTAACTTATAGGCAAATATACAATATATCTCTTGGAGTGGCTCGTGGTATTGCTTATTTGCATCATGGTTGTGACATGCAAATTTTGCATTTTGATATCAAGCCACATAACATCCTTCTTGATGAGAACTTTATCCCAAAAGTTTCAGATTTTGGCTTGGCAAAGCTTTATCCTGTAGACAGAAGCATTGTCACTTTGACTGCAGCCCGGGGAACAATTGGATACATGGCCcctgaattattttatcataatattggGGGAGTATCGTACAAGGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAATAGGAGGAGAAATTTGAATCCACATGCAGATCATTCAAGTgaacttttctttcctctctggATTTATGATCAATTGAGTGGAGAAAATgagatagaaatagaaaatattaccAAGGAGGAATATAATAATGAGGCAAAAAAGATGTTTTTGGTAGCATTATGGTGTATACAATTGAAACCAAATGACCGTCCTTCAATGAATAAAGTAGTAGAGATGTTGGAAGGAGAACTTGAGAACATTGAAATGCCTCCAAAACCTTCCTTATATCCACATGAAATGATTCAAGATATCAAAAACGAATCAAATCAAAGTCTTTTAAATGATTCCATTGGATCTACAACTTATCTTGAGGAAAGTACTATTCATACTTCTTTGGAGTATTCTCCTTGA 2109 0.3926 MKRRALAITILLFLQTCAAASPIHDCPASSCGGIPNISYPFRLRGDPLRCGDKRYELVCENNATVLTLFSGKYHVREIDYRRHKIRVSDAGVVEDAACSFFMPRYFLYSGNFSGIYMGPGPDPLNLDGSQASVAYFSCTDPITDDPRYVAVETTGCGSGGHVYAVVKDSRNDFGVKDIKVGCQLKVATFAHWGTVQDHKSSEKVSYADVHNMLTYGFGLSWLYVVCEDRCGKGKACRVVNESTGEVQCDQQDCRYVYEGNNVTYDCGVTGVLDIITAISLYCIGVYRGLMQNFGLNKATSYDGDREVEIGKSIGRYILPYFIIRFLFGVVAFVMLLICKWGRRHKSKYGNIEAFLQGNTLMPIRYSYKEIKHMTRGFKEKLGQGGFGLVFKGKLHSGSFAAIKMLRKSKANGEEFISEVATIGRIHHMNVVRLIGFCVEATNRALVYEFMSNGSLDKYIFSKQDSISLTYRQIYNISLGVARGIAYLHHGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPVDRSIVTLTAARGTIGYMAPELFYHNIGGVSYKADVYSFGMLLMEMANRRRNLNPHADHSSELFFPLWIYDQLSGENEIEIENITKEEYNNEAKKMFLVALWCIQLKPNDRPSMNKVVEMLEGELENIEMPPKPSLYPHEMIQDIKNESNQSLLNDSIGSTTYLEESTIHTSLEYSP 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2318 702 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 5 675 - -
Ssu6g2318 702 SUPERFAMILY Protein kinase-like (PK-like) 360 647 IPR011009 -
Ssu6g2318 702 Pfam Protein kinase domain 378 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2318 702 SMART serkin_6 375 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2318 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Ssu6g2318 702 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 675 IPR045874 GO:0004672
Ssu6g2318 702 Gene3D Transferase(Phosphotransferase) domain 1 450 656 - -
Ssu6g2318 702 Gene3D Phosphorylase Kinase; domain 1 354 449 - -
Ssu6g2318 702 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Ssu6g2318 702 ProSiteProfiles Protein kinase domain profile. 375 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2318 702 Pfam Wall-associated receptor kinase galacturonan-binding 26 89 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2318 Ssu-Chr6 52744076 52755092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2318 27 669 Receptor kinase-like Gene Family AT1G66910 35.111 3.74e-110 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ssu6g2318 Pkinase 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2318 - - pvu:PHAVU_001G075800g 882.478