Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2307 ATGGCCGATACGAAGGTGGAGACCATCGCCAGATTAGCCCAATGGAAAATCGAGAACTTCGGACCCTGCTCCTACAAAAAATCAGACCCTTTCAAGCTCGGAATTTGGAACTGGTACATGTCCATAGAGCGGAACCGGTACCTCTACATACACATCTTTCCAGAACCTTCTCGGGTTTCTAAGGAACAGCCACCTGTCGCTCGCTTCATCCTACGAGTCTCTAATAACTCTGGCCCTTCCCGCAAGTTTTACATTTCCCCTGTTCATGAAAGGGTGCTTAGGACATGTGATGACTTTGTCTGGCCTGTGGATACTACATTCCTTGGTCGCTTTGTTATTGATGTTGAATTTCTTGACCTGAAGACCTGCCCTGTGAATGGTGGAGAAGCCAGATCTGTATGGCCATCTGATGGAAAACTGCAAACTGTTGCAGCTCAAAGCACTCTTCGATGCCTGTCTCGCATGCTTGAGGAGGCTATACATGCTGACCTCACCATTATCACCGCAGATGGTACTCTGAGGGCTCATAAGGCAGTTTTATCTGCAAGTTCTACCGTGTTCCATGACTTGTATCTTCACAATGGTGATGAAAAAGAGACATCTACGATCCACATGGAAGATATGTCTCAAGAATCCTGCATGTCCCTTCTGAGTTACCTGTACGGCACTATAAAACAGGAAGATTTCTGGAACCACAGGCTTGCATTGCTTGGAGCTGCCAATAAGTATGAGATTGGTGACCTCAAAGATGCCTGTGAGGAAAGCCTACTGGAAGATCTTAACTCGGGAAATGTTCTGGAGAGGCTAAACGATGCTTGGCTTTACCAGTTGCACAAGTTGAAGAAAGGATGTTTCACATACTTATTTGATTTTGGTAAGATATATGATGTTAGAGATgaaataaatacctttttccGACATGCAGATAGGGAGCTAATGCTGGAGATGTTTCAGGAAGTGCTTACAATTTGGAAATAG 978 0.4427 MADTKVETIARLAQWKIENFGPCSYKKSDPFKLGIWNWYMSIERNRYLYIHIFPEPSRVSKEQPPVARFILRVSNNSGPSRKFYISPVHERVLRTCDDFVWPVDTTFLGRFVIDVEFLDLKTCPVNGGEARSVWPSDGKLQTVAAQSTLRCLSRMLEEAIHADLTIITADGTLRAHKAVLSASSTVFHDLYLHNGDEKETSTIHMEDMSQESCMSLLSYLYGTIKQEDFWNHRLALLGAANKYEIGDLKDACEESLLEDLNSGNVLERLNDAWLYQLHKLKKGCFTYLFDFGKIYDVRDEINTFFRHADRELMLEMFQEVLTIWK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2307 325 PANTHER OS08G0495500 PROTEIN-RELATED 1 325 IPR044714 -
Ssu6g2307 325 SMART BTB_4 162 260 IPR000210 GO:0005515
Ssu6g2307 325 CDD BTB_POZ_ZBTB_KLHL-like 161 243 - -
Ssu6g2307 325 Gene3D Potassium Channel Kv1.1; Chain A 136 289 IPR011333 -
Ssu6g2307 325 PANTHER OS08G0103600 PROTEIN 1 325 - -
Ssu6g2307 325 Pfam BTB/POZ domain 154 258 IPR000210 GO:0005515
Ssu6g2307 325 ProSiteProfiles BTB domain profile. 162 221 IPR000210 GO:0005515
Ssu6g2307 325 SUPERFAMILY POZ domain 145 258 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2307 Ssu-Chr6 52321549 52325387 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu6g2307 BTB 4.6e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2307 K10523 - gmx:100775687 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2307 6 52321549 52325387 Ssu6g2307 6 52321549 52325387 ECH