Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2304 ATGAACACTGAGATGGAGCTTGTGAATAGCCAAAAGCTAAAACAACAGCAGCAACAGCATTTTCATGTGTTGGTGGTAGATGATAGTGTCATAGACAGGAAGCTTTTGGAGAGGCTCCTAAGAGATTCTTCATGCAAAGCTACCTTCGTGGATTCTGGTGACAAGGCTTTGAAATATCTTGGCCTGCTTGATGATGAACTTGATAATGCTTCCTCAACTTCTTCAGAATCATTGCAACAAAACGGAATCAAAGTGAATTTGATCATGACTGACTACTGCATGCCAGGAATGAGTGGCTATGATTTACTCAAACGAATCAAGGGATCTTCTTGGAAAGATGTCCCAGTCGTCATAATGTCATCAGAAAACGTACCATCTAGAATCAGCAtGTGCTTAGAAGGAGGGGCAGAGGAGTTTCTATTGAAGCCTCTTCAGCCATCAGATCTGAAAAAGCTCCAGCCATGCTTTCTGAAATCCTCTGATAATTCTAGTGAACAAGAATCTGCTGACAGATCCGCAGATTCtcacaatgacaataataacgATACCATTAACAAAACAAAGGCATTGTGTCCGGagcatggttttaaattgcagtttgCATCTACAATTGCAACTACAATATTGTGA 630 0.3841 MNTEMELVNSQKLKQQQQQHFHVLVVDDSVIDRKLLERLLRDSSCKATFVDSGDKALKYLGLLDDELDNASSTSSESLQQNGIKVNLIMTDYCMPGMSGYDLLKRIKGSSWKDVPVVIMSSENVPSRISMCLEGGAEEFLLKPLQPSDLKKLQPCFLKSSDNSSEQESADRSADSHNDNNNDTINKTKALCPEHGFKLQFASTIATTIL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2304 209 SMART REC_2 21 153 IPR001789 GO:0000160
Ssu6g2304 209 SUPERFAMILY CheY-like 21 151 IPR011006 -
Ssu6g2304 209 Gene3D - 22 192 - -
Ssu6g2304 209 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 183 IPR045279 GO:0009736
Ssu6g2304 209 MobiDBLite consensus disorder prediction 160 186 - -
Ssu6g2304 209 CDD REC_typeA_ARR 23 152 - -
Ssu6g2304 209 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 10 183 - -
Ssu6g2304 209 ProSiteProfiles Response regulatory domain profile. 22 157 IPR001789 GO:0000160
Ssu6g2304 209 Pfam Response regulator receiver domain 23 151 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2304 Ssu-Chr6 52220237 52224052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2304 16 159 Response Regulator Gene Family AT2G41310 59.589 3.72e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu6g2304 Response_reg 9.7e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2304 K14492 - gmx:100790440 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2304 6 52220237 52224052 Ssu6g2304 6 52220237 52224052 ECH