Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2301 ATGGCGTCTACCATCAAGAGTAAAGTGTTTGATTCGGAAGAAGCTTCAGCGATGGTTAAGGAACTGAGAGTAACGTTTGATTGTGGCAAGACTCGTGGCTACGAATGGAGAACTTCCCAGTTGAAGGCCCTCATCAAGTTAACTGAAGAGCACGAGAAAGAGATCGTTCAAGCTCTTCACTCCGATCTAGCTAAGTCTGAAACCGAAGCCTTTGTGCAAGAGATTGCTATGTTGAAAAACTCATGTAAAGTCGCACTCAAGGAATTGAAACATTGGATGACTCCTGAAAAGACCAAAACTTCAATCGCAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAACCACTGGGGGTTGTGTTAGTCATCTCTGCATGGAACTACCCTTTTTTGTTGTCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGTAATGCTGTGGTTTTAAAACCATCAGAAATTTCTCCGGCCACATCATCACTGCTGGCAAAACTGCTGGGAGACTACATGGATAACTCATGTATTAGAGTTGTTGAGGGAGCAGTTGATGAAACATCTGCATTACTGCAGCAAAAGTGGGACAAAATTTTCTATACAGGTAATGGACGAGTGGGACGCATTGTGATGGCTGCTGCTGCAAAACACCTTACACCAGTTGTGCTGGAGCTTGGAGGAAAATGTCCAGTTGTTGTTGATGCAAATATCAATTTAAAGGTAGCAACAAGACGAATAATTGCAGGAAAGTGGGGTTGTAATAATGGACAAGCCTGCATTTCTCCGGATTATATTATAACAACAAAAGACTATGCTCCCAAGTTGGTGGATGCCCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCGGAAGATTTGTCCCGTATTGTGAACTCCAACCACTTTGCTCGCTTGACAAAGCTCTTGGATGATGATAAGGTTTCTGGTAAGATTGTTTATGGAGGCGAAAAGGATGAAAGCAAATTGAGGATTAGCCCCACTGTTCTATTGGATGTCCCACGGGATTCTCTAATTATGAGTGAGGAGATATTTGGTCCTTTACTTCCCATCCTCACGGTGGACAAACTGGAAGAAAGCTTTGATGTGATCAATTCAGGGTCAAAGCCTCTTGCTGCATATATATTTACAGCCAACAAGAAGCTCAAGGAGCAATTTGTCACAACTGTTTCAGCTGGCGGTTTGGTTGTTAATGACACTactttacatCTTGCAGTTCATACTTTGCCATTTGGGGGAGTTGGTGAGAGTGGTGTGGGTGCATACCACGGGAAATTCTCATTTGATGCTTTCAGCCACAAAAAAGCAGTTCTTTATCGCAGTTTTATCGGTGATGCACCAGTAAGGTACCCACCATACACAAATACAAAGCTGAGATTGCTGAAAGCCCTCATTGGTGGTGGCATACTTGGTATTATTCGTGCCCTGTTTGATGCCCTGTGGTTCTGTCCTATCAGATGCCATGCTAATACTGATATTACATGTGTTGCCGCAAATCAACCCCGCAACGCCAAGAAGCCCACCAACCCATCTTCTCATGATCACCGCCTTTCCTCCTCAGCTGTTTTCAAAGTTCAGGGAAATGTATACCCTCTTGGGCATTACACAGTGTCCCTCAACATCGGTTATCCCCCTAAGCTTTACGACCTTGATATTGACTCAGGTAGTGACCTCACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCAAGCCTCGTGATCAACTTTATAAACCCAATCACAACCTTGTGCAATGTGTGGACCAGTTGTGTTCTGAAGTGCACTTATCAACAGATCATCATTGTGCTTCCCCAGATGACCAATGTGACTATGAGGTTGAGTATGCAGATCATGGATCATCTCTGGGTGTGTTAGTCCGGGACTACATTCCCTTACAATTTTCCAATGGCTCTGTCGTGCGCCCTAGGATAGCCTTTGGGTGTGGATATGATCAAAAGTATTCTGGTCCTACCTTCCCACCTTCTACAGCAGGAGTCCTTGGCCTTGGCAATGGCAGAGCAAGCATTTTATCTCAGCTTCGTTCGTTGGGTCTGATCCGCAATGTGGTTGGCCACTGCTTAAGTGCAAGAGGAGGAGGGTTTTTATTCTTTGGAGATGATTTCATTCCCTCTTCAGGAATTGTTTGGACATCCATGTTGCCTAGTTCTTCTGaGAAACACTACAGCTTAGGACCAGCAGAACTGTTTTTCAATGGAATGGCTACTACTGTTAAGGGTCTTGAACTTATCTTTGATAGTGGGAGCTCTTACACATACTTCAACTCCCAAGCCTATCAAGCTGTTGTTGATTTGGTAACTAATGATTTAAAGGGAAAACAGTTGAAAAGAGCAACCGAGGATCCATCACTTCCAATTTGTTGGAAGGGTTCAAAGTCTTTCAACTCGTTAAGTGACGTCAAGAAATATTTCAAGCCCCTAGCATTGAGCTTCACAAAAAGCAAGAATCTGCAGATGCATCTACCACCAGAAGCTTATCTTATTATCACTAGTCATGGCAATGTCTGCTTGGGGATTCTAGATGGCACTGAAGTGGGACTAGAAAATCTTAACATAATAGGAgACATCTCTTTACAAGATAAAATGGTGATTTATGACAACGAGAAACGGCAAATTGGATGGGTTTCTTCAAATTGTGATAGGCTTCCCAATGTGGATCGTGATTTCGAAGGTAATCTTCCACACCCATATGCAGCCAATTTGGGTATCTTTGGGGACAGTTGTCCTGCATCTTATGAAGTAACAGACGGTCAATGA 2799 0.4316 MASTIKSKVFDSEEASAMVKELRVTFDCGKTRGYEWRTSQLKALIKLTEEHEKEIVQALHSDLAKSETEAFVQEIAMLKNSCKVALKELKHWMTPEKTKTSIATFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNAVVLKPSEISPATSSLLAKLLGDYMDNSCIRVVEGAVDETSALLQQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKCPVVVDANINLKVATRRIIAGKWGCNNGQACISPDYIITTKDYAPKLVDALKTELEKFYGKNPLESEDLSRIVNSNHFARLTKLLDDDKVSGKIVYGGEKDESKLRISPTVLLDVPRDSLIMSEEIFGPLLPILTVDKLEESFDVINSGSKPLAAYIFTANKKLKEQFVTTVSAGGLVVNDTTLHLAVHTLPFGGVGESGVGAYHGKFSFDAFSHKKAVLYRSFIGDAPVRYPPYTNTKLRLLKALIGGGILGIIRALFDALWFCPIRCHANTDITCVAANQPRNAKKPTNPSSHDHRLSSSAVFKVQGNVYPLGHYTVSLNIGYPPKLYDLDIDSGSDLTWVQCDAPCKGCTKPRDQLYKPNHNLVQCVDQLCSEVHLSTDHHCASPDDQCDYEVEYADHGSSLGVLVRDYIPLQFSNGSVVRPRIAFGCGYDQKYSGPTFPPSTAGVLGLGNGRASILSQLRSLGLIRNVVGHCLSARGGGFLFFGDDFIPSSGIVWTSMLPSSSEKHYSLGPAELFFNGMATTVKGLELIFDSGSSYTYFNSQAYQAVVDLVTNDLKGKQLKRATEDPSLPICWKGSKSFNSLSDVKKYFKPLALSFTKSKNLQMHLPPEAYLIITSHGNVCLGILDGTEVGLENLNIIGDISLQDKMVIYDNEKRQIGWVSSNCDRLPNVDRDFEGNLPHPYAANLGIFGDSCPASYEVTDGQ 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2301 932 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 757 768 IPR001969 GO:0004190|GO:0006508
Ssu6g2301 932 Pfam Aldehyde dehydrogenase family 11 444 IPR015590 GO:0016491
Ssu6g2301 932 Gene3D Acid Proteases 715 900 IPR021109 -
Ssu6g2301 932 SUPERFAMILY Acid proteases 534 898 IPR021109 -
Ssu6g2301 932 PANTHER ALDEHYDE DEHYDROGENASE 6 485 IPR012394 GO:0006081
Ssu6g2301 932 CDD ALDH_F3FHI 15 446 - -
Ssu6g2301 932 SUPERFAMILY ALDH-like 14 460 IPR016161 GO:0016491
Ssu6g2301 932 Pfam Xylanase inhibitor C-terminal 756 888 IPR032799 -
Ssu6g2301 932 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 442 IPR016162 GO:0016491
Ssu6g2301 932 Gene3D Acid Proteases 517 714 IPR021109 -
Ssu6g2301 932 ProSiteProfiles Peptidase family A1 domain profile. 542 889 IPR033121 -
Ssu6g2301 932 Pfam Xylanase inhibitor N-terminal 542 714 IPR032861 -
Ssu6g2301 932 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 224 424 IPR016163 GO:0016620
Ssu6g2301 932 CDD nucellin_like 540 893 IPR033823 GO:0004190
Ssu6g2301 932 PANTHER ALDEHYDE DEHYDROGENASE 6 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2301 Ssu-Chr6 52161971 52199768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2301 75 484 Aldehyde Dehydrogenase Gene Family AT1G44170 75.854 0.0 664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2301 6 52161971 52199768 Ssu6g2301 6 52161971 52199768 ECH