Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2298 ATGAGGATACAGAAGGAATATGGATCAGTGCCTTGCTCTTGGCCATTTTATTTCAAGATGCAAATGTCAGTTCTATCTCCTGTCACAATGCGCATTATACCTTCTATCACTCTTCTGCTAAGATCTGATGaagtaattgataaatattttgctGCCCAGGCTATGGCTAGTCTTGTTTGTAATGGTAATAAGGGAATAGATCTTGCCATTGCAAATTCCGGAGCTGTTGCTGGATTGATAACTATTATTGGGCATGTAGAGTCAGATATGCCAAATCTCATGGCTTTATCAGAAGAATTTTCTTTGGTACGAAACCCCGATCAAGTTGTTTTGGATCACCTTTTCGAAATTGAAGATGTAAAAGTGGGGTCTACCGCCAGGAAATGTATACCCCTCTTAGTGGATCTCCTGAGACCAATACCAGAAAGGCCTAGTGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGATAGCAATAAATTAATCCTGGCTGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTGTCCTTGAGTCCTCAAGACTCAACTGAGGCCGCTATTTCCGAGTTATTGAGAATATTATTTTGCAACTCTGACCTTATTAAACACGAAGCATCAACAAATTCATTGAACCAGCTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTCATGAACTTTTTGATGCTGGCAACATTAGAGACTCAGAATTAGCTAAACAGGCCATTCAGCCATTGATTGACATGCTTAACACAACATCAGGGCATGAGCAGGAGGCTGCTCTCATGGCCTTGATCAACTTAACTTCAGGAAATTCTTCGAAAGTATCACTTCTTACTGATGTGGAAGGAAACCCACTTAAATGTTTATACAAAATACTGTCTTCTGCGTCATCCTTGGAACTGAAGAGCCATGCTGCACAACTCTGCTTTGCTCTTTTTGGCAATAGCAAGATCAGAGCAGATCCAGTTGCTTCAGAATGCCTAGAACCCCTTATATCACTGATGCAGTCTGGTTCTGAGACAGCAATAGAATCTGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACAGGTAGAGCTTGCAGCAGCCTACAATGTTGTTGATCTCCTTGTGAGCTTGATTTCTGGTACAAACTATCAGCTTATCGAGGCTACCATATCCACTCTTATCAAATTGGGCAAAGACAGGACTCCAAGTAAACTAGAAATGGTGAAAGTTGGCGTTATTAATAATTGTCTCAAGCTACTACAATTAGCACCTAGCTCTTTATGCTCCACAATAGCTGAGCTGTTTCgcattttaactaatagtagtgCAATTGCAAGAAGTTCAGATGCTGCAGACATTGTAGAACCTCTTTTCCATGTTTTGCTCCGACGAGATTTCAACTTATGGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAACCGCAAAGTCTTGCAACCTTGAAACTTACTCCAAGCCAAGTTATTGAACCCTTGATTTCTTTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTTTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATCACAACAAAGAATGCAGTTGTACCCCTTGTACAGCTTGCAGGAATTGGAatattaaacttacagcaaacAGCAATAAAAGCATTGGAAAAAATTTCTACAAGTTGGCCAAAGGCGGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGAAGACCCTCAGCCACCACATGCACTCTGGGAATCAGCTGCTTTAGTTCTCTCGAATGTATTACATTCCAATGCCGATTACTATTTTAAAGTTCCTGTGGTGGTTCTTGTAAAACTTTTGCACTCAACACTTGAGAGTACAATTAGCATAGCCCTTAATGCTTTAATAGTTCATGACAGAAGTGATGCTTCAAGTGCTGAGCAGATGATGGAAGCTGGAGTTATAGATGCTCTTCTGGACCTTTTAAGATCTCATCATTGTGAAGAAGCATCTGGTAGATTACTAGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTATCTAAGTATGCTATAGCGCCTTTATCCCAGTATCTATTGGATCCACAAACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTTTAGCTTTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGAGCTAGTGCCTCTGTTTCTGCATGTCGTGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGGTGGTGGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACCAATAGACGAGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTGCTGTCTCCAAACACACAAGTTGCTGCACAAGCTGCTTTACtgatcaaatttttgttttctacccATACACTGCAAGAATATGTGTCAAATGAGTTGATCAGGTCTTTAACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACAATCAATGAGGAGGTTTTGAAAACTCTGCATGTAATATTCATGAACTTCCCTAAGCTCCACACATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTCGGGGCACTTAAATCTGGTGGTGAAGCAGCTCAGGACTCTGTACTTGACACGTTTTGCTTGCTAAGACAATCTTGGTCAACTATGCCAATAGATATAGCAAAGTCTCAAGCTATGATTGCTGCTGAAGCCATCCCTATTTTGCAAATGCTCATGAAAACCTGCCCACCTAGTTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGTTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAAACAAACTATGGGAAGCACTAATGCATTCTGCCGGTTGACAATAGGCAATGGTCCTCCAAAACAAACCAAGGTAGTGAATCATAGTACTTCTCCAGAATGGAAAGAAGGATTCACTTGGGCATTTGATGTACCTCCAAAGGGCCAAAAGCTACATATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTTGGAAGAGTCACTATCCAAATTGATAAAGTTGTGTCGGAGGGGGTTTATAGTGGATTATTCAGTCTTAATCATGACGGTAACAAAGATGGCTCGTCCCAAACACTTGAAATTGAGATTATATGGTCCAACAGGATTTCTAATGATGACATTTGA 3273 0.4054 MRIQKEYGSVPCSWPFYFKMQMSVLSPVTMRIIPSITLLLRSDEVIDKYFAAQAMASLVCNGNKGIDLAIANSGAVAGLITIIGHVESDMPNLMALSEEFSLVRNPDQVVLDHLFEIEDVKVGSTARKCIPLLVDLLRPIPERPSAPPVAVRLLISIADGSDSNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFCNSDLIKHEASTNSLNQLIAVLRLGSRNARYSAARALHELFDAGNIRDSELAKQAIQPLIDMLNTTSGHEQEAALMALINLTSGNSSKVSLLTDVEGNPLKCLYKILSSASSLELKSHAAQLCFALFGNSKIRADPVASECLEPLISLMQSGSETAIESGVCAFERLLEDEQQVELAAAYNVVDLLVSLISGTNYQLIEATISTLIKLGKDRTPSKLEMVKVGVINNCLKLLQLAPSSLCSTIAELFRILTNSSAIARSSDAADIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQEDPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLESTISIALNALIVHDRSDASSAEQMMEAGVIDALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARASASVSACRALISLLEDQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTQVAAQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSQTLEIEIIWSNRISNDDI 1090
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2298 1090 ProSiteProfiles C2 domain profile. 943 1060 IPR000008 -
Ssu6g2298 1090 Gene3D C2 domain 962 1089 IPR035892 -
Ssu6g2298 1090 Gene3D - 748 960 IPR011989 -
Ssu6g2298 1090 Gene3D - 19 246 IPR011989 -
Ssu6g2298 1090 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 961 1067 IPR035892 -
Ssu6g2298 1090 PANTHER - 22 1088 - -
Ssu6g2298 1090 Gene3D - 482 747 IPR011989 -
Ssu6g2298 1090 Pfam C2 domain 963 1062 IPR000008 -
Ssu6g2298 1090 SUPERFAMILY ARM repeat 142 499 IPR016024 -
Ssu6g2298 1090 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 22 1088 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Ssu6g2298 1090 Gene3D - 247 449 IPR011989 -
Ssu6g2298 1090 CDD C2 964 1054 - -
Ssu6g2298 1090 SUPERFAMILY ARM repeat 567 960 IPR016024 -
Ssu6g2298 1090 SMART arm_5 161 201 IPR000225 GO:0005515
Ssu6g2298 1090 SMART arm_5 498 539 IPR000225 GO:0005515
Ssu6g2298 1090 SMART arm_5 746 787 IPR000225 GO:0005515
Ssu6g2298 1090 SMART arm_5 789 829 IPR000225 GO:0005515
Ssu6g2298 1090 SMART arm_5 371 411 IPR000225 GO:0005515
Ssu6g2298 1090 SMART arm_5 243 284 IPR000225 GO:0005515
Ssu6g2298 1090 SMART arm_5 330 370 IPR000225 GO:0005515
Ssu6g2298 1090 SMART arm_5 663 704 IPR000225 GO:0005515
Ssu6g2298 1090 SMART C2_3c 963 1059 IPR000008 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu6g2298 Ssu-Chr6 52105574 52110766 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2298 149 351 U-box Gene Family AT1G71020 29.808 5.77e-07 51.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2298 - - gmx:100780150 1966.81