Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2297 atgaaaatttttgttacAGAAGGAGTAGTTCCAACCTTATGGAATCAACTAAATCCAAAGAACAAGGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTTTGTGGTGACAAAGATGGATACTGGAAAGCAACATTAGAAGCCGGAGGTGTGGATATCATAGTAGGGCTATTGTCTTCAGATAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTAGCACGTTTAATGCTGGCATTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCAGCTTGTTGGTCGGGAAAATGACATTTCTGTAAGAGCTAGTGCTGCTGATGCCCTAGAGGTCCTCTCTTCGAAGTCTACCAAGGCTAAAAAGGTCATTGTCAATGCCGATGGTATTCCAATCCTTATTGGAGCTATAGTTGCTCCTTCTAACGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTGCAGGAGCATGCAACTCAAGCTTTAGCCAATATCTGTGGTGGCATGTCCTCATTAATACTATATCTTGGACAACTTTCACGTTCTTCTCGCCTTGATGCACCAGTTGGTGATATAATTGGCGCTCTTGCTTATACACTAATGGTCTTTGAGGAAAAAGTTGATGTTGATGAGAAACATTTTGATGCAACTCAAATAGAGGATATTCTAGTAACTCTTTTAAAGCCTCGAGACAACAAACTGATTCAAGAGCGTGTCCTCGAGGCTATGGCTAGCCTATATGGAAACGTCTGTCTCTCAAAGTGGCTCATTCAGGAAGATTCAAAGAAGGTTCTTATTGGACTTATAACCATGGCTGCCACTGATGTGCAAGAGTATCTGATACTTTCATTGACAAGCTTGTGTTGTGATAAGATTGGAGTTTGGGAGgccataaaaaaaagagaaggtaTCCAATTACTAATATCATTGCTTGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGTTGCTAGCAATCTTAACTGACCAGGTCGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCACCATTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGAAGCAGCTAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGTGCTTGTGTTGAAAGTGCTGGAGCCATCCCGTCATTTTTGTGGCTTCTTAAGAGTGGTGGACCAAAAGGACAGGAAGCTTCTGCTATGGCACTCACAAAGCTTGTCCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTAGGGGATTCTCCAAGCTCAAAAGCCCACATAATCCGAGTTTTAGGTCATGTTCTTACTATGGCTTCACAGAATGATCTCCTTGAAAAGGGTTCTGCAGCTAATAAAGGCCTGAGATCCCTAGTTCAGGTCCTCAACTCATCAAATGAGGAAACCCAAGAATATGCAGCTTCAGTTCTAGCTGATTTATTTATCACAAGACAAGACATTTGTGATAGTCTTGCAACTGATGAGATTGTACTTCCTTGCATGAAGCTTTTGACTAGCAAAACTCAAGTTGTTGCCACTCAGTCAGCTCGAGCATTAAGTGCTCTGTCTCGTCCAACAAAGAACAAGGCTGCAAATAAGATGTCTTATATTGTAGAGGGTGATGTCGAGCCACTAATCAAGTTAGCTAAAACATCCTCTGTTGCTGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTAGCTGAAGATGTTGTTTCAGCTTTAACAAAAGTTCTGGCAGAAGGAACCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTAAAGCATTTTCCACTAGGTGACGTTCTCAAGGGGAACGCTCAATGCCGTTTCACTGTGCTTGCACTTGTTGATTCCTTAAGAGCCATGGATATGGACGGAACTGATGCTGCAGATGCTTTAGAAGTAATAGCTCTGCTAGCCAGGACTAAACAGGGTGTCAACTTCACTTATCCTCCATGGTCAGCTCTGGCTGAAATACCATCAAGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCTTCCCTTGTGCAAGACAAGGCAATTAAAATTCTATCTAGACTTTGTGGGGATCAGCCAGTTATTCTTGGTGATTTGTTATCTGCTAGTTCCAGATCCATCGGTTCGTTGGCTAATAGAATAATGAACTCCTCCAGTTTAGAAGTAAAAATTGGAGGGGCTGCCTTACTAATTTGTGCtgcaaaggagaagaaagagctTTCAATGGATTCACTGGATGCTTCTGGGTATCTAAAAccattaatatattctttagtTGAAATGATAAAGCAGAGTTGTAGCTATTCTTCATTAGAAATTGAAGTTCTCACTTCCAAAGGTTTTATGGAGAGAAATGCTTTTCAAGAAGttgatgaatttgatattcCTGATCCAGCCACTGCCTTGGGAAGCACTATTGCCATGTGGTTGCTTTCCGTTATTGCTTCTTTCCATATAAAGAGCAAGCTCACAATTGTGGAAGCTGGTGGACTTGAAGCTCTCTCCGACAAACTTGCAAGACATACTTCAAATCCACAGATTCCTTTATCAGTTCCCTTTGTCTTCTGGCTAGCCTCTTCTTCAGCTTTAGGCCCTCTTATTTCTATTAAGGCTGAGACTGAATTCTAA 2739 0.4107 MKIFVTEGVVPTLWNQLNPKNKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGRENDISVRASAADALEVLSSKSTKAKKVIVNADGIPILIGAIVAPSNECMQGDGGQALQEHATQALANICGGMSSLILYLGQLSRSSRLDAPVGDIIGALAYTLMVFEEKVDVDEKHFDATQIEDILVTLLKPRDNKLIQERVLEAMASLYGNVCLSKWLIQEDSKKVLIGLITMAATDVQEYLILSLTSLCCDKIGVWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPSFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLGDSPSSKAHIIRVLGHVLTMASQNDLLEKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALSRPTKNKAANKMSYIVEGDVEPLIKLAKTSSVAAAETAVAALANLLFDPFIAAEALAEDVVSALTKVLAEGTLEGKQNASRALHQLLKHFPLGDVLKGNAQCRFTVLALVDSLRAMDMDGTDAADALEVIALLARTKQGVNFTYPPWSALAEIPSSLELLVCCLAEGPSLVQDKAIKILSRLCGDQPVILGDLLSASSRSIGSLANRIMNSSSLEVKIGGAALLICAAKEKKELSMDSLDASGYLKPLIYSLVEMIKQSCSYSSLEIEVLTSKGFMERNAFQEVDEFDIPDPATALGSTIAMWLLSVIASFHIKSKLTIVEAGGLEALSDKLARHTSNPQIPLSVPFVFWLASSSALGPLISIKAETEF 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2297 912 PANTHER - 1 884 - -
Ssu6g2297 912 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 884 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Ssu6g2297 912 SUPERFAMILY ARM repeat 10 636 IPR016024 -
Ssu6g2297 912 Gene3D - 466 816 IPR011989 -
Ssu6g2297 912 SMART arm_5 84 125 IPR000225 GO:0005515
Ssu6g2297 912 SMART arm_5 41 82 IPR000225 GO:0005515
Ssu6g2297 912 SMART arm_5 384 424 IPR000225 GO:0005515
Ssu6g2297 912 SMART arm_5 505 545 IPR000225 GO:0005515
Ssu6g2297 912 SMART arm_5 127 176 IPR000225 GO:0005515
Ssu6g2297 912 SMART arm_5 550 590 IPR000225 GO:0005515
Ssu6g2297 912 SMART arm_5 591 631 IPR000225 GO:0005515
Ssu6g2297 912 SMART arm_5 299 340 IPR000225 GO:0005515
Ssu6g2297 912 SMART arm_5 342 382 IPR000225 GO:0005515
Ssu6g2297 912 SMART arm_5 463 503 IPR000225 GO:0005515
Ssu6g2297 912 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 95 139 IPR000225 GO:0005515
Ssu6g2297 912 Pfam Armadillo/beta-catenin-like repeat 346 381 IPR000225 GO:0005515
Ssu6g2297 912 Gene3D - 208 465 IPR011989 -
Ssu6g2297 912 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 353 395 IPR000225 GO:0005515
Ssu6g2297 912 Gene3D - 1 207 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2297 Ssu-Chr6 52101929 52105356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2297 272 554 U-box Gene Family AT2G23140 27.586 1.50e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2297 - - gmx:100796864 1600.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2297 6 52101929 52105356 Ssu6g2297 6 52101929 52105356 ECH