Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2294 ATGGCCGCAGAACTTCACTTACCCCCCGGTTTCAGATTCCACCCCACCGACGAAGAACTCGTCATCCACTACCTTAGCCGCAAATGCGCGGCGCAGCAAATCGCCGTTCCCATAATCGCCGAAATCAACCTCTACAAGCACGACCCATGGGACCTTCCAGGAATGGCCTTGTACGGAGAAAAAGAGTGGTATTTTTTCTCGTCGAGGGACCGGAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCCGGAATCGGGTACTGGAAGGCGACCGGAGCGGATAAACCGATTGGTAAACCGAAACCGGTTGGCATTAAGAAAGCGTTGGTGTTTTACACCGGAAAAGCGCCCAAAGGAGTGAAAACCAATTGGATCATGCACGAGTATCGTGTCGCCGACGTGGATCGTTCCGTTCGCAAAACGAACAGCTTAAGGCTGGATGACTGGGTGCTGTGTCGCATCTACAACAAGAAAGGCGCAATTGAGAAGGAGCAACCGCCGAGCGGGGTGCGCAAAGTAGAGCGTTCCGAAATGGAGGACGAGAAGCCTGGGGTTACGACACGTGGCGGCGTTCTTCAGCCGCCGCATGCTGCGGCGACGGCGGATTGCGTGTACTTCGAGACCTCCGACTCGGTGCCGCGGCTGCACACGACGGACTCGAGCTGCTCGGAGCACGCGGTGTCGCCGGAGTTCGCGAGCGAGGTGCAGAGCGTGCCCAAGAGGGGCAACGAGTTTGCGTATAATTACGTGGATGCCACTCTCGGATCGCAGTTCCAGTTCCAGGGCGCGAATCAGATGTCGCCGCTGCAGGACATCTTCATGTACCTCTCCCAGCCATTCTGA 843 0.5753 MAAELHLPPGFRFHPTDEELVIHYLSRKCAAQQIAVPIIAEINLYKHDPWDLPGMALYGEKEWYFFSSRDRKYPNGSRPNRSAGIGYWKATGADKPIGKPKPVGIKKALVFYTGKAPKGVKTNWIMHEYRVADVDRSVRKTNSLRLDDWVLCRIYNKKGAIEKEQPPSGVRKVERSEMEDEKPGVTTRGGVLQPPHAAATADCVYFETSDSVPRLHTTDSSCSEHAVSPEFASEVQSVPKRGNEFAYNYVDATLGSQFQFQGANQMSPLQDIFMYLSQPF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2294 280 MobiDBLite consensus disorder prediction 163 193 - -
Ssu6g2294 280 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Ssu6g2294 280 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Ssu6g2294 280 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Ssu6g2294 280 PANTHER NAC TRANSCRIPTION FACTOR 56 2 258 - -
Ssu6g2294 280 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Ssu6g2294 280 MobiDBLite consensus disorder prediction 163 184 - -
Ssu6g2294 280 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 2 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2294 Ssu-Chr6 51989026 51991059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2294 1 280 NAC Transcription Factor Family AT1G01720 69.388 1.00e-144 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu6g2294 NAM 4.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2294 - - gmx:100170714 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2294 6 51989026 51991059 Ssu6g2294 6 51989026 51991059 ECH