Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2293 ATGGAACGTGAAGAGGGCAAACAACCACCCCAAAAAACCCCATTACACTCTCAACTTGAGCAAGTTAATTCTGATAACTTTGTTCTAGAAAATGGCTTGCAAGAGCAAAGTGGGACATTCACAACGTTTGCATCACTTGAAAGTGAAAGTGAGAGTGATTCCTCTTTTGATGACAATGATGATTACAATGATGATGGGGATGCTGATTTTTTCCTGAGCCAAGAGTTTGAAACAGACCTTCAGTTTCTTGAGAGTGAAGGAAGCAATGATGATTATGATGATGAAGGAATGGAAGAAGATGAGATTGACGTGGATGAATTGACTTATGAAGAGTTGATTGAGTTGGGAGATTTTATAGGACAAGAGAAGAGAGGGTTATCAGCAAATGAAATTTGTTCATGCTTGCATTCTCACACTTTCCATTTTGCTGAAAACAAAAGTGGAATTGATCGCTGTGTGATTTGTCAGGTTGAGTATGAAGAAGGTGAAGCCTTGGTGGCAATTCAGTGTGAGCACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCAATATGTAACACTGAAATTTCAGTTCCCAAGATGGTTAGTTAA 612 0.3889 MEREEGKQPPQKTPLHSQLEQVNSDNFVLENGLQEQSGTFTTFASLESESESDSSFDDNDDYNDDGDADFFLSQEFETDLQFLESEGSNDDYDDEGMEEDEIDVDELTYEELIELGDFIGQEKRGLSANEICSCLHSHTFHFAENKSGIDRCVICQVEYEEGEALVAIQCEHPYHTDCISKWLQIKKVCPICNTEISVPKMVS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2293 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 200 IPR013083 -
Ssu6g2293 203 MobiDBLite consensus disorder prediction 45 68 - -
Ssu6g2293 203 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Ssu6g2293 203 SUPERFAMILY RING/U-box 151 199 - -
Ssu6g2293 203 Pfam RING-H2 zinc finger domain 150 193 IPR024766 GO:0008270
Ssu6g2293 203 SMART ring_2 152 192 IPR001841 -
Ssu6g2293 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 200 IPR045191 GO:0061630
Ssu6g2293 203 MobiDBLite consensus disorder prediction 51 68 - -
Ssu6g2293 203 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2293 Ssu-Chr6 51939357 51939968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2293 99 196 C3H Transcription Factor Family AT3G63530 48.515 1.63e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2293 K19045 - gmx:100777284 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2293 6 51939357 51939968 Ssu6g2293 6 51939357 51939968 ECH