Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2287 ATGTCGACGCAGAATCGTCGTTCGTCGTTTTCTTCCTCAACAGCGTCGTCTTTGGCGAAACGACATCCGTCGTCGTCGTTGTCGTCGTCGGGGAAGGCGAAGGTGGTTCCTCCTCAAGTCACGGCCAGGAAGAGAGCGCCTCTTGCCAACGTCACCAATCAGAAGAATGCGCCTTCTTCTTTGGTGCCAAGTTCAATTAAAGTTGCCAAGACCAAGAAAGAGGCTCCTGCAAGAACCAGCATCACAAGATCAACAATTTGTAGGAACAAGTTACCTGAGTTAAAGACTAATTCAAGCACAACTGTTATTCCAAAGGCTAATTCTTTACCACAAAGGAAGGATGCTGCTCCCACAGTTGCCACAGTCTCCATGCCTGTTCGGATCAGCATGGATATTTCTCCTAGTAAATCAGATGGGAGGTCTGTTTCTCTGGATGAGTCAATGTCTTCTTGTGATTCTATCAAGAGTCCTGAAGTTGAATATCTGGACAACAGGGATGTTTCAGCTGTTGATTCAATTCAGAGAAAGACAATAAGCAATTTGAACATTTCTGATACCACAGAACCAGAAGGTAACATATGTAGTAGGGAAATAATTGTTGAGTTGGAAAGAGAGGACAAGATTGTCAATATCGATAACATTTACTCCGATCCGCAGCTTTGTGTAACCTATGTTTGTGACATCTACAAGCACCTACGTGAATCTGAGaaaaagaaaaggcctTCCACTGACTTCTTGGAGAGAATTCAGACAGACATAAATGTTAGCATGCGTGCTATATTGATTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGGCTTGTACCAGATACATTGTATTTGACAGTGAACTACTTAGATCGATATCTTTCAGGGAATGCTATGAATAGGCAAAGGTTGCAGTTACTTGGTGTTTCCTGCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAAGAATATTGTTATATAACTGATAATACGTACTTAAAAGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTGAATTATCTTAAGTTCGAAATGACAGCCCCAACAATTAAATGTTTCTTAAGACGATTTGTCCATGCAGCTGCTCAAGATGTCCAGGAGTTCTCTTCACTTCAACTAGAGTGCTTAACCAACTATATTGCCGAATTATCTCTCTTGGAGTACAGTATGCTCTGTTATCCCCCATCACTGATAGCTGCTTCTGCAATTTTTCTTGCCAAGTTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCACATTGCAGCATTACATGCTTTATCGGCCTTCTGACTTGGGTGCTTGTGTAAAAGATCTACATCGTCTTTGTTGCAGCAGCCATAATTCTAATTTACCTGCAATACGAGAGAAATACAGTCAGCATAAGTACAAATGTGTGGCCAAGAAGCACATCCCTCCTTCAATACCTCAAGAAGTTTTCCAAAATTGA 1473 0.4134 MSTQNRRSSFSSSTASSLAKRHPSSSLSSSGKAKVVPPQVTARKRAPLANVTNQKNAPSSLVPSSIKVAKTKKEAPARTSITRSTICRNKLPELKTNSSTTVIPKANSLPQRKDAAPTVATVSMPVRISMDISPSKSDGRSVSLDESMSSCDSIKSPEVEYLDNRDVSAVDSIQRKTISNLNISDTTEPEGNICSREIIVELEREDKIVNIDNIYSDPQLCVTYVCDIYKHLRESEKKKRPSTDFLERIQTDINVSMRAILIDWLVEVAEEYRLVPDTLYLTVNYLDRYLSGNAMNRQRLQLLGVSCMMIASKYEEICAPQVEEYCYITDNTYLKEEVLQMESAVLNYLKFEMTAPTIKCFLRRFVHAAAQDVQEFSSLQLECLTNYIAELSLLEYSMLCYPPSLIAASAIFLAKFILFPSKKPWNSTLQHYMLYRPSDLGACVKDLHRLCCSSHNSNLPAIREKYSQHKYKCVAKKHIPPSIPQEVFQN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2287 490 MobiDBLite consensus disorder prediction 1 35 - -
Ssu6g2287 490 PANTHER CYCLIN-A1-1 33 489 - -
Ssu6g2287 490 Pfam Cyclin, N-terminal domain 227 353 IPR006671 -
Ssu6g2287 490 Gene3D - 241 354 - -
Ssu6g2287 490 PANTHER CYCLINS 33 489 IPR039361 -
Ssu6g2287 490 MobiDBLite consensus disorder prediction 46 66 - -
Ssu6g2287 490 SUPERFAMILY Cyclin-like 216 353 IPR036915 -
Ssu6g2287 490 ProSitePatterns Cyclins signature. 258 289 IPR006671 -
Ssu6g2287 490 PIRSF Cyclin_A_B_D_E 1 487 IPR039361 -
Ssu6g2287 490 CDD CYCLIN 354 448 IPR013763 -
Ssu6g2287 490 SUPERFAMILY Cyclin-like 356 482 IPR036915 -
Ssu6g2287 490 SMART cyclin_7 263 347 IPR013763 -
Ssu6g2287 490 SMART cyclin_7 360 449 IPR013763 -
Ssu6g2287 490 Gene3D - 227 476 - -
Ssu6g2287 490 SMART Cyclin_C_2 356 480 IPR004367 -
Ssu6g2287 490 CDD CYCLIN 257 346 IPR013763 -
Ssu6g2287 490 MobiDBLite consensus disorder prediction 1 81 - -
Ssu6g2287 490 Pfam Cyclin, C-terminal domain 356 476 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2287 Ssu-Chr6 51520325 51524021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2287 4 490 Core Cell Cycle Gene Families AT1G44110 60.123 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2287 K06627 - gmx:100776207 775.393