Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2283 ATGCCTAATGGCACCCTCAGTTACCAATTGTCTCTTACTGGGGCTGATAGGTTGACATGGccaagaagaaaaaacataatCCTTGATGTGACTAAGGGGCTTGCTTATTTGCATTGTGAAATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACCAACATACTTTTGGATTCCAAAATGAATGCCAAATTGGCAGATTTTGGGTTGGCCAAGCAAGGTAGTGAGGGTCAGTCTCATCTCACTACAAGGGTTGCTGGCACATATGGTTATGTAGCACCCGAGTATGCTTTATATGGCCAACTAACTGAGAAAAGTGATGTTTACAGTTTCGGTATTGTGATTCTTGAAATCATGAGTGGAAGAAAAGTGATTGATACTTTAAATTCATCTGAAGATTCAATCGCAGATTGGGTATGGACACTTACGGAATCTGGAAAGATGGGGGAAATATTTGATCAGTCAATAAGAGAAGGGCCAGAAAAAATTATGGAAAGGTTTATTCATGTTGGAATGCTATGTGCTCATGCGGTAGTGGCGCTAAGGCCAACTATTGCTGAGGCCCTTAAGATGTTAGAGGGTGACATTGACATTCCCAAATTACCTCACAAGCCAGTGCCACTAGGTCATGTGTCCTTTCAATCTTCTCTGTTGCATGGTTTGCAGAGAAGTGGTTGA 678 0.41 MPNGTLSYQLSLTGADRLTWPRRKNIILDVTKGLAYLHCEIKPPIYHRDIKATNILLDSKMNAKLADFGLAKQGSEGQSHLTTRVAGTYGYVAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVIDTLNSSEDSIADWVWTLTESGKMGEIFDQSIREGPEKIMERFIHVGMLCAHAVVALRPTIAEALKMLEGDIDIPKLPHKPVPLGHVSFQSSLLHGLQRSG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2283 225 PIRSF ILK 1 198 - -
Ssu6g2283 225 SMART serkin_6 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2283 225 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Ssu6g2283 225 Pfam Protein kinase domain 18 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2283 225 SUPERFAMILY Protein kinase-like (PK-like) 1 193 IPR011009 -
Ssu6g2283 225 ProSiteProfiles Protein kinase domain profile. 1 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2283 225 PANTHER OS01G0253100 PROTEIN 1 219 IPR045271 GO:0004714|GO:0006468
Ssu6g2283 225 Gene3D Transferase(Phosphotransferase) domain 1 1 198 - -
Ssu6g2283 225 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2283 Ssu-Chr6 51394045 51394722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2283 1 222 Receptor kinase-like Gene Family AT1G11050 60.082 1.39e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu6g2283 Pkinase 6.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2283 - - gmx:100798901 393.66