Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2282 ATGGATAAGCAAGAGATGATCCTTACCCTCCGGATGTCGCTCTTTGCTATTTTCATAGCTGGTGCTGCATCTTCTTCATGCCCAATGGATCTCAGCTACGTTGAGACCATTCCCTGGAACACTTCAGTCTGCAGAGACCCAATAGATAACCAGCCCTGTTGCCAAACTCTGTTCAGCATCTTCGGCATAGGCCTTGCTGAACGCCTCAAAGAAACTTCCATATTTTACCTTCCTGATGCAAACACTTCCTCCACTTGCTTATACGATTTCAAACTTAAGCTTGCAGCCTTATCAATCCCATCAGAAATTGTCCCTTTTTGTTTCCCTAACCCGACCCAGTTTGTTACTAACTCTTCAGCTTGTGCAGGTATTAGAACCACACAAGATTGGAAGCAAAAGGTGGGCATGGTTAGCCCACTAGACACATCTTGCAATGGGGACCTGAAAGACAATACTCGCTGCATGTTATATGCTGCAGGTGTTGCTAATCCGTTTGGCACGACAGATCTAAGCACCACCGGTTGCATACTAGGCCTGCCGCAACCGCCTAGTGCAGTAACAAAAGGGTCATCAAATAACCGAGGAAAAGTGATGAAGCTGGTTTTTTCGTTATCGGGTGTTGTTATTGGTGTTGTGCTTGCTTTTGTACTGGTGGTCATGTCCAGGAAGTGGGACAAGAGAAGGAAGGAAAATGTTCATCACAGGGAAGTTGAAAACGAGGTCAGGGCCAGTGTTTTGCCTAACACTGGTGCTAAATGGTTTCACATAACAGAGCTTGAACGTGCCACTAACAAATTTTCTCAGGGCAATATGGTTGGCCGAGGTGGTGATGGGGTTGTGTACAAAGGGACTCTTTTGGATGGCACTGTGGTTGCAGTTAAGGAAATTTTTGATTTGGAAATTAAAGGGGATGAAGAGTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTGCTCTACGGGGTTGCTGCGTTACAAGTGATAATTTGAAAGGTAAGAGGAGGTTTCTGGTTTATGATTTCATGCCCAATGGCACCCTCAGTTACCAATTGTCTCTTACTGGGGCTGATAGGTTAACATGGCCACAAAGAAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTATCACCGTGACATAAAAGCTACCAACATACTTTTGGATTCCAGAATGAATGCTAAATTGGCAGACTTTAGCTTGGCAAAACAAGGTAGTGAGAGCCAGTCTCATCTCACCACAAGGGTTGCTGGCACATATGGTTATTTGGCACCAGAGTATGCTCTGTATGGACAACTAACGGAGAAGAGTGATGTGTACAGTTTTGGTATTGTGATTCTTGAAATCATGAGTGGAAGAAACGTGATTGATACTTTGAATTCATCTATGGATTCAATCACCGATTGGGTATGGACACTCGTGGAATCTGGAAAGATGGGGGAAATTTTTGATCAATCAATAAAGGAAGGACCAGAAAAAATTATGGAAAGGAAAAGTTTGGTGAGATTCAAACGTTGA 1563 0.4331 MDKQEMILTLRMSLFAIFIAGAASSSCPMDLSYVETIPWNTSVCRDPIDNQPCCQTLFSIFGIGLAERLKETSIFYLPDANTSSTCLYDFKLKLAALSIPSEIVPFCFPNPTQFVTNSSACAGIRTTQDWKQKVGMVSPLDTSCNGDLKDNTRCMLYAAGVANPFGTTDLSTTGCILGLPQPPSAVTKGSSNNRGKVMKLVFSLSGVVIGVVLAFVLVVMSRKWDKRRKENVHHREVENEVRASVLPNTGAKWFHITELERATNKFSQGNMVGRGGDGVVYKGTLLDGTVVAVKEIFDLEIKGDEEFCYEVEIISKIKHRNLLALRGCCVTSDNLKGKRRFLVYDFMPNGTLSYQLSLTGADRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSRMNAKLADFSLAKQGSESQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRNVIDTLNSSMDSITDWVWTLVESGKMGEIFDQSIKEGPEKIMERKSLVRFKR 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2282 520 SMART serkin_6 266 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2282 520 Pfam Protein kinase domain 267 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2282 520 Gene3D Transferase(Phosphotransferase) domain 1 347 518 - -
Ssu6g2282 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672|GO:0006468
Ssu6g2282 520 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Ssu6g2282 520 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 172 516 - -
Ssu6g2282 520 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 13 156 - -
Ssu6g2282 520 SUPERFAMILY Protein kinase-like (PK-like) 246 501 IPR011009 -
Ssu6g2282 520 Pfam SPARK 23 154 IPR043891 -
Ssu6g2282 520 PANTHER OS01G0253100 PROTEIN 172 516 IPR045271 GO:0004714|GO:0006468
Ssu6g2282 520 PANTHER OS01G0253100 PROTEIN 13 156 IPR045271 GO:0004714|GO:0006468
Ssu6g2282 520 ProSiteProfiles Protein kinase domain profile. 266 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2282 520 Gene3D Phosphorylase Kinase; domain 1 225 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2282 Ssu-Chr6 51384254 51386264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2282 19 512 Receptor kinase-like Gene Family AT1G11050 46.863 1.86e-153 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Ssu6g2282 Pkinase 5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2282 - - ccaj:109788171 759.214