Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2281 ATGCCACAGCTATTGTTAACCGAGCAAGGTCCAACAGATTTAGGCACGGCTAGTTGCGTACTAGGCATGCCACTGTCTACAAAAGGGTCGTCAAATAGAGAACAAGTGCTGAAACTGGTTTTTGGGTTGTTGGGTGCTGTTGTTGGTGTTGTGCTTGCTTTTGTGTTGATAGTCATGTACAGGAAGTGGGATAAGAGAAGGAAGGAAGATATGTATCACAGGTCCGTTGAAAACGGTGTGAGGAACAGTGTTTTGCCTAACACTGGAGCAAAATGGTTTCACATATCGGAGCTTGAGCGTGCCACTAATAAATTTTCGCAGAAGAATATGGTTGGCCAGGGTGGTGATGGGGTTGTATACAAAGGGACTCTTTCGGATGGCACTGTGGTTGCGGTTAAGGAAATTTTTGATTTGGAGACCAAAGGGGATGAAGATTTCTGCTATGAGGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTGCTCTTAGGGGTTGTTGCATTTCAAGTGATAATTTGAAAGGTAAGAGGAGGTTTCTGGTTTATGATTTCATGCCCAATGGCAGCCTCAGTTACCAATTGTCACTTGGTGGGGCTAACAGGCTAACGTGGCCACAAAGAAAGAACGTAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACCAACATACTTTTGGATTCCAAAATGAAAGCCAAAGTGTCAGATTTTGGGCTGGCCAAGCAAGGTAACGAGGGCCAGTCTCATCTCACCACAAGGGTTGCTGGCACATACGGTTATTTGGCACCAGAGTATGCTCTGTATGGACAACTAACTGAGAAGAGTGATGTGTACAGTTTTGGCATTGTGATTCTTGAGATCATGAGTGGAAGAAAAGTGCTCGATACCATGAATTCATCAGTGGTTTTAATCACGGATTGGGCATGGACACTCGCAAAATCAGGGAAGGTGGAGGAAATTTTTGACCAGTCGATAAGAGAAGAGGGACCACAGAAAATTATGGAAAGGTTTGTTCTTGTGGGGATACTTTGTGCTCACGCAATGGTGGCGTTAAGGCCTACTATTGCCGAGGCCCTTAAGATGTTAGATGGTGACATTGACATTCCCCCATTACCTGACAGGCCGGTGCCACTGGGTCATGAATCATTTCAATCTTCTTTGTTGCATGGTTTGCAAAGAAGTGGAAGATCGACGCcttatctttcatcttattTATCAACCATAAGCACAGTCAGCACACTTTAG 1293 0.4385 MPQLLLTEQGPTDLGTASCVLGMPLSTKGSSNREQVLKLVFGLLGAVVGVVLAFVLIVMYRKWDKRRKEDMYHRSVENGVRNSVLPNTGAKWFHISELERATNKFSQKNMVGQGGDGVVYKGTLSDGTVVAVKEIFDLETKGDEDFCYEVEIISKIKHRNLLALRGCCISSDNLKGKRRFLVYDFMPNGSLSYQLSLGGANRLTWPQRKNVILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVSDFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTMNSSVVLITDWAWTLAKSGKVEEIFDQSIREEGPQKIMERFVLVGILCAHAMVALRPTIAEALKMLDGDIDIPPLPDRPVPLGHESFQSSLLHGLQRSGRSTPYLSSYLSTISTVSTL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2281 430 CDD STKc_IRAK 111 380 - -
Ssu6g2281 430 SUPERFAMILY Protein kinase-like (PK-like) 90 395 IPR011009 -
Ssu6g2281 430 Gene3D Transferase(Phosphotransferase) domain 1 186 383 - -
Ssu6g2281 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Ssu6g2281 430 Pfam Protein kinase domain 106 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2281 430 ProSiteProfiles Protein kinase domain profile. 105 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2281 430 PANTHER OS01G0253100 PROTEIN 13 406 IPR045271 GO:0004714|GO:0006468
Ssu6g2281 430 Gene3D Phosphorylase Kinase; domain 1 66 185 - -
Ssu6g2281 430 SMART serkin_6 105 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2281 430 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 13 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2281 Ssu-Chr6 51367054 51368346 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2281 5 408 Receptor kinase-like Gene Family AT1G11050 55.765 8.30e-157 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Ssu6g2281 Pkinase 9.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2281 - - ccaj:109788171 741.88