Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2279 ATGAGAAACCCATCATCATCAACAGCGACAACCAAGAACAAGAAGAGTAGCAGTAGTAGCGGCAcctgcaacaacaacaacaacaacattggTAGCAGCAACAATAACAGTACGAGCACGAACACGAACACGAATACTCCATGCTGCAGCAAGGTTGGGATGAAGCGAGGGCCGTGGACGCCGGAGGAAGACGAGGTGCTGGCGAATTACATTAAGAAAGATGGCGAAGGGCGTTGGAGAACTCTCCCCAAGCGCGCCGGCCTTCTCCGCTGCGGCAAAAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCTCCGTCAAACGAGGCCACATCGCCCCCGACGAGGAAGACCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACcgGTGGTCTTTGATAGCTGGAAGGATTCCTGGACGAACAGATAATGAAATAAAGAACTATTGGAATACCCATCTAAGTAAGAAGCTTATCAGCCAAGGGATTGATCCAAGAACGCACAAGCCTCTCAACAACTCACCCTCCATTAACGTCCCTTCTTCTTCTAAGTCCACTATCCCACCTTTTAATAAACCTCCTCCTATGATCATCCCCAACCACCATCGTCACGATCCCTCTATTGTTAACCAAGGGGTCCGTGTTCATCATTTGGGCCAACATCAACAACCTCCTGGGAACAATAATCCCTATGGCGAAGGTATTAATAACCCAGTACCCGCTGCCACCGACGATGTTCCTGCGATGGGTTTCATAGACAATGATGATTGCAACGATGATATCAACAACATCAATTATTACTCAGATGATGTCTTTTCTTCCTTCCTCAACTCTTTGATCAACGAGGATGCTTTTGCGGCCCAGCAGCACCACGTGCATACAGAGCTCCCCATTGAGCGTAGCATTCCACTGCCTTGTGATGATCGTGTTGATGATCCGCTGATCACCTCTGCGTCTGCACCGCAAGGTTATGATGATGACATCGGGGTTCTGTGGGAATCGCCACTCGTGTCTGCGTCTGCTTTCAGCCAAAACGTTAACGACCCCGTCACCAAGAGGGTTCGTGATCACCACGATCAATAG 1083 0.494 MRNPSSSTATTKNKKSSSSSGTCNNNNNNIGSSNNNSTSTNTNTNTPCCSKVGMKRGPWTPEEDEVLANYIKKDGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNNSPSINVPSSSKSTIPPFNKPPPMIIPNHHRHDPSIVNQGVRVHHLGQHQQPPGNNNPYGEGINNPVPAATDDVPAMGFIDNDDCNDDINNINYYSDDVFSSFLNSLINEDAFAAQQHHVHTELPIERSIPLPCDDRVDDPLITSASAPQGYDDDIGVLWESPLVSASAFSQNVNDPVTKRVRDHHDQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2279 360 MobiDBLite consensus disorder prediction 163 188 - -
Ssu6g2279 360 SUPERFAMILY Homeodomain-like 53 150 IPR009057 -
Ssu6g2279 360 Gene3D - 55 108 - -
Ssu6g2279 360 SMART sant 55 105 IPR001005 -
Ssu6g2279 360 SMART sant 108 156 IPR001005 -
Ssu6g2279 360 MobiDBLite consensus disorder prediction 166 186 - -
Ssu6g2279 360 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 39 295 - -
Ssu6g2279 360 Gene3D - 113 179 - -
Ssu6g2279 360 MobiDBLite consensus disorder prediction 1 50 - -
Ssu6g2279 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Ssu6g2279 360 MobiDBLite consensus disorder prediction 1 56 - -
Ssu6g2279 360 CDD SANT 58 103 IPR001005 -
Ssu6g2279 360 CDD SANT 114 154 IPR001005 -
Ssu6g2279 360 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Ssu6g2279 360 Pfam Myb-like DNA-binding domain 114 154 IPR001005 -
Ssu6g2279 360 Pfam Myb-like DNA-binding domain 56 103 IPR001005 -
Ssu6g2279 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 103 IPR017930 -
Ssu6g2279 360 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 39 295 - -
Ssu6g2279 360 ProSiteProfiles Myb-like domain profile. 51 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2279 Ssu-Chr6 51314455 51315656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2279 42 325 MYB Transcription Factor Family AT3G13540 50.345 1.03e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g2279 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2279 K09422 - gmx:100797847 459.529