Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2278 ATGTCGCGGAGGATCGACTACGGGAATTCTTTTCTAAGAAAGGAGAAATCACCGACGTCAAGCTCCTGCgtcTTAGAACTTGAAATTGTAACTCTTCTGTTCTGTGTTGACTCGCTTGTTAATTCAGACATGGTGGCTCGAAAACATGGGGATGAAAATCTTCCTCGTCCATGGAGTCGATAttcaaagaagaaagaggacAAAGTGACTGCTCCAGATTTGGACAAACGTGCTAGAGCTAAGGGACGAGGAGAAAATTCGAAGGAGGGTGTTGGTGTTGGTGTTGATGACCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAAGTCTAAACTGTGGGCGAATGATACGTCGATTGTGAACAATGTTGGCAACAAAAAAGCAACGTCGAATAAGGATAACGAAGGTGCATCAGTTGCAGTTGATCGAAATGGCTCATTAGAAGATGGGTATCTGGATAATTCTGAACCCAGCAAGTCACGGAGGCTGAACGTGAGTAGAGTGACAAAAGAGTGGTCTGATTCTGAAAGtagtgatgatgaagatgatgacgATGACAATGATTCTTCATGCATTGACGATGATCACAAAGATGATCATGGGGATGCCGGTGAAGATGAAGAAAATTGTGATCCAAGATATGGTGCTCAAGAGTTAGATATAGAGGGCCAAGAAGATACTAGTGGAGAGGATGTTACCCATGGAAAGACTCAAGTGAATGCGACTCAGCAAGGGGGGCAATTATCAAAATCAGAAGACGAGAAAGGAGTTTTTGAGTCCTGTCGACTGTTTGTCCGTAATCTGCCATATACGACCAcTGAGGAGGAACTGGAAGAACATTTCAGTCACGTTGGTAGTGTCCCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATGCACAGGAATGGCATATGTTCTTTATACAGTTCCAGAATTTGCAGCCAGGGCTCTTGAAAAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTAATGCCAGCCTTACAAAGACATTCGGATAATCATGAGAACAATGTTTTGAAGGACCAAAGCTCTAAAACCCTTAAACAACagagagaggaaaaaaggaaagCAGTTGAAGCTAGCGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTGGTGGAAAACATTGCTCGGAAATATGGTGTTAATAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTGCGTATTGCTCTGGGAGAGACTCAAGTGATTTCAGAGACAAAAGAGGCATTTAAAAATGCTGGAGTGAATGTGGAGGCTTTGGAGGAACttgctaataataaaatagatggCTTAAAAAGGAGTAATCATGTGCTTTTAGTGAAGAACTTGCCATATGGTTCTAGGGAAAATGAACTTGCAAATATGTTTGGGAAATTTGGTAGTGTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGTTGGTTGTTTTCCTCGAACCAGCAGAAGCTCGAGTAGCTTTTAGAGGTTTAGCTTACAAGCGTTAcaaGGATGCTCCATTATACTTGGAGTGGGCTCCTTCGAATATTCTTAGCCAAAGTTCAACATCTAAAAGTAATGAACTGAATGGCGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAACACGTGGAAAGAATATCAGATGTGGATATTGATCCAGACAGAGTAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACAACAGATGAAAGTCTGAGGAAGCATTTTAGTGAACACATGAAAGTGGGAAGAATTTTGAGTGCCAAGGTGAAGAAGCATttgaaaaatgggaaaaatgTATCTATGGGGTATGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTACAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACTTTGTCATGTCAAGAATGATGGGcaaaaacaaaagacaattGAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACAATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCAAGGAAGTTTGGAAGTCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAGAATGCCCTGAAAGCACTTTCAAGCACCCACCTCTATGGTAGGCATCTGGTGATAGAGAGAGCGAAAGAAGGCGAGAGTTTGGAAGAACTGCGGGCCCGAACAGCTGCCCAATTTAGTGATGAACACAATGGACTTCAAGGTGCTATTAAATTATCCAAGAAAAGGAATCACGTTGACATCTTAGATGAAGGAAAGATGAAGTTTGGAAGGATTGCTGACTAG 2418 0.4003 MSRRIDYGNSFLRKEKSPTSSSCVLELEIVTLLFCVDSLVNSDMVARKHGDENLPRPWSRYSKKKEDKVTAPDLDKRARAKGRGENSKEGVGVGVDDPQLQDFLQVMQPRVKSKLWANDTSIVNNVGNKKATSNKDNEGASVAVDRNGSLEDGYLDNSEPSKSRRLNVSRVTKEWSDSESSDDEDDDDDNDSSCIDDDHKDDHGDAGEDEENCDPRYGAQELDIEGQEDTSGEDVTHGKTQVNATQQGGQLSKSEDEKGVFESCRLFVRNLPYTTTEEELEEHFSHVGSVPQVHLVVDKDTKRCTGMAYVLYTVPEFAARALEKLDNSIFQGRLLHVMPALQRHSDNHENNVLKDQSSKTLKQQREEKRKAVEASGDTRAWNSLFMRPDTVVENIARKYGVNKSDLLDREADDLAVRIALGETQVISETKEAFKNAGVNVEALEELANNKIDGLKRSNHVLLVKNLPYGSRENELANMFGKFGSVDKIILPPTKTLALVVFLEPAEARVAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSKSNELNGAIGENDAKRQILEQHVERISDVDIDPDRVEARSLFVKNLNFKTTDESLRKHFSEHMKVGRILSAKVKKHLKNGKNVSMGYGFVEFDSPETATNVCRDLQGTVLDSHALILQLCHVKNDGQKQKTIEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPRKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDEHNGLQGAIKLSKKRNHVDILDEGKMKFGRIAD 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2278 805 MobiDBLite consensus disorder prediction 49 86 - -
Ssu6g2278 805 SUPERFAMILY RNA-binding domain, RBD 675 757 IPR035979 GO:0003676
Ssu6g2278 805 MobiDBLite consensus disorder prediction 49 96 - -
Ssu6g2278 805 CDD RRM6_RBM19_RRM5_MRD1 679 753 - -
Ssu6g2278 805 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 579 662 IPR000504 GO:0003723
Ssu6g2278 805 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 45 782 - -
Ssu6g2278 805 SUPERFAMILY RNA-binding domain, RBD 248 347 IPR035979 GO:0003676
Ssu6g2278 805 Coils Coil 354 374 - -
Ssu6g2278 805 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 679 755 IPR000504 GO:0003723
Ssu6g2278 805 MobiDBLite consensus disorder prediction 227 255 - -
Ssu6g2278 805 CDD RRM3_RBM19_RRM2_MRD1 265 338 - -
Ssu6g2278 805 Gene3D - 575 674 IPR012677 -
Ssu6g2278 805 CDD RRM4_RBM19_RRM3_MRD1 459 530 - -
Ssu6g2278 805 MobiDBLite consensus disorder prediction 178 195 - -
Ssu6g2278 805 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 336 IPR000504 GO:0003723
Ssu6g2278 805 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 461 522 IPR000504 GO:0003723
Ssu6g2278 805 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 681 748 IPR000504 GO:0003723
Ssu6g2278 805 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 581 655 IPR000504 GO:0003723
Ssu6g2278 805 Gene3D - 156 352 IPR012677 -
Ssu6g2278 805 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 342 IPR000504 GO:0003723
Ssu6g2278 805 MobiDBLite consensus disorder prediction 126 215 - -
Ssu6g2278 805 MobiDBLite consensus disorder prediction 236 253 - -
Ssu6g2278 805 PANTHER RNA-BINDING PROTEIN 19-RELATED 45 782 - -
Ssu6g2278 805 SMART rrm1_1 680 751 IPR000504 GO:0003723
Ssu6g2278 805 SMART rrm1_1 460 527 IPR000504 GO:0003723
Ssu6g2278 805 SMART rrm1_1 580 658 IPR000504 GO:0003723
Ssu6g2278 805 SMART rrm1_1 265 338 IPR000504 GO:0003723
Ssu6g2278 805 CDD RRM5_RBM19_like 579 660 IPR034423 -
Ssu6g2278 805 MobiDBLite consensus disorder prediction 196 215 - -
Ssu6g2278 805 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 459 531 IPR000504 GO:0003723
Ssu6g2278 805 MobiDBLite consensus disorder prediction 347 373 - -
Ssu6g2278 805 SUPERFAMILY RNA-binding domain, RBD 456 543 IPR035979 GO:0003676
Ssu6g2278 805 MobiDBLite consensus disorder prediction 126 140 - -
Ssu6g2278 805 SUPERFAMILY RNA-binding domain, RBD 563 667 IPR035979 GO:0003676
Ssu6g2278 805 Gene3D - 675 776 IPR012677 -
Ssu6g2278 805 Gene3D - 441 554 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2278 Ssu-Chr6 51279938 51289346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2278 572 771 Eukaryotic Initiation Factors Gene Family AT1G49760 30.660 1.05e-13 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2278 6 51279938 51289346 Ssu6g2278 6 51279938 51289346 ECH