Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2275 ATGTCGAAGACGAAGGCATTCCAAGGCGCGAACGTGTTCATGTCGCGAAACCTTGTGCCGCCTGAAGTCTTCGACGCGCTACATGACGCCGTCAAAGATAACGGCGCTCAAATCCACCTTTGCTGCGACCCTTTCCGTAACGGCCCCGACGATTACCACATCATCTCTTCCAGGAAACACGTAATTAATTCCTCACTTCTACTCTTGTTTTccctctttctcttattttttctgATTCCTATCTCCGCGTCGCAGGAGAAGTTCGACGATCTTAAATCCAAGGGCTGTAAATTGCTCGGTCCTAGATGTGTTCTTTCGTGTGCCAAAGCCGGAAGGCCTCTGCCTAAACAAGGCTTCACTTGTTGCCTTGCCATGGAAGGCGTCAAAGTACTTGCGTCTGGCTTTGATATGGATGAGAAGGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGGGGAGTTCTACACATTAAAGCATCATTGGATTTGAACTTTGTCATTGTGAAGAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATATTGAAGAAACCAATAGTCACTTATGAATGGTTGAAACAATGCTCAGATGAGCATCGTGTTGttcctcaagagtcatacaagGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATCCCAGCAGATAAGCGTAAAGAGATGGAGAAGCTTATTATAAGAACTGAGATTCATTTAGACAAGAATTCAGCTCCTGAAGGTGATAAATATAAGGTGGCAAAACGATGGGGCCACATTCTTATTGTGACAAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAGTCCTTCCCTGTTCAGCATGAATCTGTATCTTCACATAAAGTAACTAGGGACTTAACAATGCAACATAGCCAAGAAAAGGATATTGGGAAATTGCAATCCGCGACATCCTCAGGTGCTACAGATTCAAATATGCAAGTTTTTTCTTATGTTGAGTATATGGATAGAGATCTAGAAGCTACACAGTCCTCTGTTCCAAATGCTCCTTTATTTGTTAAAGAGGAAGATGCTGAACCTCCTCCGTTGCAGACCAGCAATGAATTGAACTTTGATGGTGCTGTTGCCAATGATTCTGAATCTGATGATAATGATCTTTACTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCTTGTGAAATGCGGAAACTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGGTATATGTCTTTTAATGACAAATTGACACACATAGTAATTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTGGGTGTAATTTCTGTTGTCAAAACTGTATGGCTTGAAGATTGTGACCGTGAAAAGAAAGAAGTCCCTGTTCTTAGGCGACACATTGCATATGATCTGCTTCATCCAAAAGCAAGCTTGGTAAAAGGAGTAACAGGCAGTATGTCTATGGATCACGGTAAAAGCTCCAGCTTTCATCAAAGCTTACAGAGTGATCAGGGGGGCTTTGAAATTCTAAAGCCAGAATCtttggagaaaagaaaagaggaaacaTATACGGGTATATATGGTCACTCATTCAGTAAAACAATAGGCAGAACTATGCTGCAAAATCAACTTCCTGATAATAAATTGAGGACACAAAGGATGACCCAACATGACTCCACTGTTCAATACGCGAAGTCAGCAAATGTTTTCAGAGGGAAactattttgtttctcaaatttatttccTGAAGAAAGGAGGGCTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGACAGATAATAAGTGGGCAAACAAAACAGAGTGTCCACTATACTATTGAGAGTCATGGTGTAACACCCATGTTGACAGGTGGTTCCAAGAGTTTGTATATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCTTGGGTTTGAAAGCTTCCGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGAATTCTCCTAAGGAACTTGTGTTTTGTTCTGGGAGCTAAATTTGTGGAGAAGTTGACTAAGAAGGTCACCCATTTATTGTGTAAATTCACCAATGGGCCCAAGTATGAGGCTGCTTGTAGATGGGGGATCCAATCAGTTACATCGGAATGGATTTTTGAATGCGTCAAACAGaatGGAGTTGTTGCCATTGATCAATTTTTACCAAAAGAAGTCACTGCTCAAGACCGAGAGGCAGGAATTTGCACTGTGAGTCAATTTCCCACCCAGGCTGTTCAAATAAGTGACATGCCCTCCCAGTTGTCAAGTCAATCACATACTTCAGGAAGCACGGCAAGTAAAAATGTCGGTTGTGGAGTTGATAATCACGAGACCAATTTTAGGATACCAAGTATTTATAGCAAAAAGGCAAGGCTTGTGGAGGAACCTTGCCCATCCAATAAGACGCCTTTGGCATCAAATTCAGGTATCCATGCCTATGAGAAGAATTTTTCCGAAGACAATATGGTTCTAGATGTTGGGGAGGTTTGTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGTAAGATGCATGATCAGCGGTCCCCAGTGCAGACAGGGTGTGAGAGAAGTATTTACCCATCTGATCGTTCAGTCCTTGGTGAAGATAATTCCAATCCTCATACTGTCTTTGGATTATCTAAACACTGGTTAGACAGAAGTGGCAGAAAAGATGATAATGGGGAGGCTTCTCAAGACAGAAGAGCAGGAATATATGATGGTTTTAGTGAAACGCAGACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTATCAGGAAGGCAAATGCTTATAGATAGAGTCCGAACTCGAAGTAGCTTGCagtga 2952 0.4085 MSKTKAFQGANVFMSRNLVPPEVFDALHDAVKDNGAQIHLCCDPFRNGPDDYHIISSRKHVINSSLLLLFSLFLLFFLIPISASQEKFDDLKSKGCKLLGPRCVLSCAKAGRPLPKQGFTCCLAMEGVKVLASGFDMDEKVKIEELVAEMGGVLHIKASLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPADKRKEMEKLIIRTEIHLDKNSAPEGDKYKVAKRWGHILIVTRKWFDQSIARRACLNEESFPVQHESVSSHKVTRDLTMQHSQEKDIGKLQSATSSGATDSNMQVFSYVEYMDRDLEATQSSVPNAPLFVKEEDAEPPPLQTSNELNFDGAVANDSESDDNDLYLSECRILLVGFEACEMRKLVNMVRKGGGSRYMSFNDKLTHIVIGNPTEMEKKDVRSLAALGVISVVKTVWLEDCDREKKEVPVLRRHIAYDLLHPKASLVKGVTGSMSMDHGKSSSFHQSLQSDQGGFEILKPESLEKRKEETYTGIYGHSFSKTIGRTMLQNQLPDNKLRTQRMTQHDSTVQYAKSANVFRGKLFCFSNLFPEERRAEIVQWISQGGGQIISGQTKQSVHYTIESHGVTPMLTGGSKSLYISSHWIRSCLEAGSLLDVDSHILYSPLPCRVPLLGFESFRFCVSQYEEKDRILLRNLCFVLGAKFVEKLTKKVTHLLCKFTNGPKYEAACRWGIQSVTSEWIFECVKQNGVVAIDQFLPKEVTAQDREAGICTVSQFPTQAVQISDMPSQLSSQSHTSGSTASKNVGCGVDNHETNFRIPSIYSKKARLVEEPCPSNKTPLASNSGIHAYEKNFSEDNMVLDVGEVCHAVPDVAAAIEDLLEQTSKMHDQRSPVQTGCERSIYPSDRSVLGEDNSNPHTVFGLSKHWLDRSGRKDDNGEASQDRRAGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSLQ 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2275 983 Gene3D BRCT domain 122 210 IPR036420 -
Ssu6g2275 983 CDD BRCT_TopBP1_rpt2_like 211 276 - -
Ssu6g2275 983 SUPERFAMILY BRCT domain 208 285 IPR036420 -
Ssu6g2275 983 SUPERFAMILY BRCT domain 673 758 IPR036420 -
Ssu6g2275 983 Pfam BRCA1 C Terminus (BRCT) domain 126 195 IPR001357 -
Ssu6g2275 983 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 971 - -
Ssu6g2275 983 ProSiteProfiles BRCT domain profile. 383 475 IPR001357 -
Ssu6g2275 983 SMART BRCT_7 209 276 IPR001357 -
Ssu6g2275 983 SMART BRCT_7 122 199 IPR001357 -
Ssu6g2275 983 SMART BRCT_7 385 465 IPR001357 -
Ssu6g2275 983 SMART BRCT_7 671 747 IPR001357 -
Ssu6g2275 983 SMART BRCT_7 575 651 IPR001357 -
Ssu6g2275 983 ProSiteProfiles BRCT domain profile. 207 286 IPR001357 -
Ssu6g2275 983 ProSiteProfiles BRCT domain profile. 573 661 IPR001357 -
Ssu6g2275 983 CDD BRCT 128 195 - -
Ssu6g2275 983 Gene3D BRCT domain 570 667 IPR036420 -
Ssu6g2275 983 SUPERFAMILY BRCT domain 383 469 IPR036420 -
Ssu6g2275 983 Pfam BRCT domain, a BRCA1 C-terminus domain 575 658 IPR001357 -
Ssu6g2275 983 Gene3D BRCT domain 372 472 IPR036420 -
Ssu6g2275 983 Gene3D BRCT domain 211 290 IPR036420 -
Ssu6g2275 983 MobiDBLite consensus disorder prediction 357 382 - -
Ssu6g2275 983 ProSiteProfiles BRCT domain profile. 674 757 IPR001357 -
Ssu6g2275 983 CDD BRCT_TopBP1_rpt2_like 674 747 - -
Ssu6g2275 983 SUPERFAMILY BRCT domain 84 208 IPR036420 -
Ssu6g2275 983 ProSiteProfiles BRCT domain profile. 125 209 IPR001357 -
Ssu6g2275 983 Gene3D BRCT domain 77 119 IPR036420 -
Ssu6g2275 983 Pfam twin BRCT domain 678 739 IPR001357 -
Ssu6g2275 983 Gene3D BRCT domain 673 756 IPR036420 -
Ssu6g2275 983 MobiDBLite consensus disorder prediction 786 805 - -
Ssu6g2275 983 SUPERFAMILY BRCT domain 576 663 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2275 1 982 Core DNA Replication Machinery Family AT1G77320 48.433 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2275 K10728 - gmx:100804966 1530