Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2273 ATGGGGAGGGGTAAGATTGAGATCAAGAGGATCGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGAAAGAATGGAATCTtaaagaaggccaaggaaaTCACTGTTCTATGTGATGCCCAAGTTTCCCTTATCATCTTTGCTGCATCTGGAAAGATGCATGACTACATCAGCCCTTCTACCACGTTGATTGACATATTGGAGAGGTACCACAAGACCTCAGGGAAGAGGCTTTGGGACGCCAAGCATGAGAACCTAAACAGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGGGAGGATATCAACTCTCTTAACTACAAGGAGCTGATGGCCTTAGAAGATGCCTTAGAAACTGGTCTCGTCAGTGTCCGCGACAAACAGATGGATGTATACAGGATGTTCAGGAGAAACGACAAGATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGTGGAAGGTGCGAGAGAAGTGGACAATGGGTTTGATCAGAGCGTAAGGGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCTATGCAGCCAAATCTTCAAGAAAGgatctaa 627 0.4386 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNSEIERLKKENDSMQIELRHLKGEDINSLNYKELMALEDALETGLVSVRDKQMDVYRMFRRNDKILEEENRELNFLWQQRLAVEGAREVDNGFDQSVRDYNSHMPFAFRVQPMQPNLQERI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2273 208 Pfam K-box region 82 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu6g2273 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu6g2273 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu6g2273 208 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu6g2273 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu6g2273 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu6g2273 208 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Ssu6g2273 208 Coils Coil 77 111 - -
Ssu6g2273 208 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Ssu6g2273 208 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 208 - -
Ssu6g2273 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu6g2273 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu6g2273 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu6g2273 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 208 - -
Ssu6g2273 208 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2273 Ssu-Chr6 51077349 51081251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2273 1 143 MADS-box Gene Family AT5G20240 69.231 3.48e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu6g2273 K-box 5.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2273 K09264 - gmx:100817554 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2273 6 51077349 51081251 Ssu6g2273 6 51077349 51081251 ECH