Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2270 ATGAAAATGCTGCCACCCGCCACCGCCGGAGAAGCCAGCCACGGCGGCGCCGGTGGCCGGACGGTGGTGGTGGGAGTGAAGATGGACTCTCACAGCACAGAGTTGCTCACTTGGGCTTTGTTCAAACTGGCTCAGCCTGGTGATCTTGTGCTTGCTCTTCATGTTCTTGGCAATgatgAAATTGTGAATCGAGACGGGAAATCCTCTTTGTTTACGCTTGTCAAAGCATTTGACTCTGTTCTTGCCGTTTATGAAGGATTCTGCAATTTGAAACAGGTGGACCTTAAGCTCAAAATATGTCGGGGTTCATCAGTAAGGAGAATTTTGGTTCGAGAAGCAAATGCTTATTCTGCAACACACATCATAGTTGGGACTCCTCAAGGTCTTCATAGAATTCGGCCATGTATATCTGTGGCAAGGTACTGTGCTAAGAAGTTACCAAAGGATTGTTGGGTTCTTGCTGTTAATAATGGGAAAGTTGTGTTCAAGAGAGACGGGTCACCCGCAACTCGTGCTGACTTAAAAGGACTTGATCGGGATCACAAAAATGGGTTGCTTGGTTCGATTCACAGGTCACTCGGCAATAGTTCAAAAGTGCTAGATGATGATGGTACCGGGATGCATGAAAAGGGTAGTGGCCAATTTTCAGATCACAGTTTGGCTAAGGCTTTTCTGGATTCTAAAGAATTCAATGGGAAGAAGGGGTGCTCTATTTGTGCTTCAATCCCAGCATTGTTGGATTCATCTTGTCACCATTCAGAAGAAGAGTCTTGTGGTGATGGTTGTGATGAGAACAACCCTTTGGCAGTAGTGCCTGTGCAGACCAATGATGCTGCTTCTCAACCAGGTTGGCCACTGCTACACAGGACAGTTGTATCTGACAGGAAATGTTCTGAAAGATCACTGTATCGCCAGATCTCTGTGGTACAATGGGCAATGCAGTTACCCTCTAGAAATCTTTCATATGCTACACATCATGACCATAAAACAAACAATTGTGACCGAGATAAGGATCGGTTTTTGGGTCTAGATACCAAGAGTGGTGCTCTTGTTCCAGTGGATGCTGAAATAGGGACTGCTTCTTCACCTGAAGACAATTCAAGAAGTATTCCTAAGGAATTGGAGGGCCTTCATGAGAAATACTCATCCACTTGCAGATTGTTTAAGTACCAAGAACTTGTATTAGCAACATCAAATTTCTTGCCAGAAAATTTGATTGGGAAAGGAGGAAGTAGTCAGGTTTATAGAGGCTGCCTTCCTGATGGTAAGGAACTTGCTGTTAAGATCTTAAAGCCATCTGATGATGTTTTGAAGCAGTTTGTtctagaaatagaaattatcaCTACCTTGCATCACAAAAACATTATTGTCCTCCTTGGCTTCTGCTTTGAGGATGGCAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTCCATGGTAATAAGAAAAATCCACTTGTGTTTGGTTGGACTGACAGATATAAGGTGGCAATGGGTGTTGCTGAGGCTTTGGAGTATCTGCATAATAATGAAGGCCAATCCGTGATCCATCGCGATGTAAAATCATCAAATGTTTTACTGTCTGAGGATTTTGAACCCCAGCTCTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCATCATCACATATAACTTGCACAGATGTTGCTGGAACATTTGGTTACATGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGACAAGATTGATGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGCGAATATCCCAAAGGTCAAGAGAGCCTTGTCATGTGGGCTAGTCCAATTCTAAACAGTGGGAAGGTGTCACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAAGAGATGGAAAGGATGCTCTTGGCAGCCACACTTTGTATAAGACGTGCTCCAAGAGCTAGGCCTCAAATGAGCCTTATCTCTAAGCTCCTTGGAGGTGATGCTGATGTAATGAAGTGGGCAAGACTAGAAGTTAATGCTTTGGAAGCACCAGAAATGTTTGATGATGAAACTTGTCCACCTTCAATTCTGCTTCTGCAGTCACATCTTAACCTCGCACTGCTTGATGTGGAGGATGACTCGCTCTCCATGTGCAGTGTTGAGCAACATGTCTCATTGGAAGACTACTTGAGAGGCAGGTGGAGCCGCTCATCAAGCTTTGATTAA 2247 0.4344 MKMLPPATAGEASHGGAGGRTVVVGVKMDSHSTELLTWALFKLAQPGDLVLALHVLGNDEIVNRDGKSSLFTLVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSVRRILVREANAYSATHIIVGTPQGLHRIRPCISVARYCAKKLPKDCWVLAVNNGKVVFKRDGSPATRADLKGLDRDHKNGLLGSIHRSLGNSSKVLDDDGTGMHEKGSGQFSDHSLAKAFLDSKEFNGKKGCSICASIPALLDSSCHHSEEESCGDGCDENNPLAVVPVQTNDAASQPGWPLLHRTVVSDRKCSERSLYRQISVVQWAMQLPSRNLSYATHHDHKTNNCDRDKDRFLGLDTKSGALVPVDAEIGTASSPEDNSRSIPKELEGLHEKYSSTCRLFKYQELVLATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKQFVLEIEIITTLHHKNIIVLLGFCFEDGNLLLVYDFLSRGSLEENLHGNKKNPLVFGWTDRYKVAMGVAEALEYLHNNEGQSVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYMAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGEYPKGQESLVMWASPILNSGKVSQLLDPSLGDNYDHEEMERMLLAATLCIRRAPRARPQMSLISKLLGGDADVMKWARLEVNALEAPEMFDDETCPPSILLLQSHLNLALLDVEDDSLSMCSVEQHVSLEDYLRGRWSRSSSFD 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2270 748 Pfam Protein kinase domain 404 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2270 748 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 11 742 - -
Ssu6g2270 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Ssu6g2270 748 ProSitePatterns Protein kinases ATP-binding region signature. 406 428 IPR017441 GO:0005524
Ssu6g2270 748 Gene3D HUPs 19 156 IPR014729 -
Ssu6g2270 748 Pfam Universal stress protein family 20 152 IPR006016 -
Ssu6g2270 748 SUPERFAMILY Protein kinase-like (PK-like) 381 669 IPR011009 -
Ssu6g2270 748 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 152 - -
Ssu6g2270 748 PANTHER OS01G0253100 PROTEIN 11 742 IPR045271 GO:0004714|GO:0006468
Ssu6g2270 748 SMART serkin_6 400 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2270 748 Gene3D Phosphorylase Kinase; domain 1 365 474 - -
Ssu6g2270 748 ProSiteProfiles Protein kinase domain profile. 400 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2270 748 CDD USP_Like 21 152 - -
Ssu6g2270 748 Gene3D Transferase(Phosphotransferase) domain 1 475 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2270 Ssu-Chr6 50973827 50977696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2270 387 667 Trihelix Transcription Factor Family AT1G68690 46.154 1.12e-75 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu6g2270 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2270 - - aprc:113846853 1304.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2270 6 50973827 50977696 Ssu6g2270 6 50973827 50977696 ECH