Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2268 ATGCATTTCTGCCGCCACACCATGCtggattttcaaaaattttctcttttattgacGGTGTTATTTCTGCTATGGAAGCCTGCGACAAGCAAAAATGGGTGCACGGATAAGTGTGGACGCGTTCACATTCAATTTCCATTTTACCTCAGAAATAGCAAGTTGAATCGCACCACCGGCTATCCTCGTGGGTTCGATCTGTTATGTACGGATGCAGATGACACTGTGTTGGAGCTGCCTTCTGttccaataaaattatttgtcaaaaacATAGATTACACGTCACAGCAAATCCAAATCTACGACCCTCAAAATTGCCTTCCCAGCGAACTCATAAAACTCGGCAATTCATCTATTTCTCCATTTAAATTCCAATCATTTCGTGAGCGTAATGTTTCCTTCTTCCGCTGCAACTTAATGTCATGCCCAATTGTGCAACTTGGATCTGATGAAGACTTTATTGATCCTGAAATAATATCTTGCACCAAGGTGAGTGATGTTTTCTCCGTCCAGTGGCAAGTACAGGATGACTTGAGGAACACCGTGGTTATGGAATGGTCCAAGCCCGACTGCAGCTCCTGTGAAGCACAAGGGCATAAATGTAAATACAAGAATGGTACCCAAGGTGAAACTGAATGTTTCGTTTGCCCAACAAACAGGATTCCAACAtcaactattatatttattgctgCAGGGGGAATAGTTGGTTTGATGCTTTTGTTGCTACTGGTCAAGGCTTTGTTTCATGCGTATGGCTATTATAAGATGAAAGGAGAAGACCAGGCTCGGATAGAGAAATTCTTGGTGGATTACAGGGCAATGAAGCCTACGAGATTCACTTATGCTGACATTAAGAGAATCACAAATGGGTTTAGTGAAAGTTTAGGAGAAGGAGCTCATGGAGCAGTGTTCAAAGGAATGCTCTCCCGAGAAATTCTCGTTGCTGTGAAGATACTCAATGACACAGTGGGAGATGGGAAGGATTTCATAAACGAAGTGGGAACCATGGGCAAAATTCATCATATTAATGTTGTCCGCTTGCTTGGATTCTGTGCAGATGGGTTCCACCGTGCTCTTGTCTACGATTTCTTCCCAAATGGTTCTCTACAAAAATTCGTAGCTCCACCAGACAATAAGGATGTTTTCCTTGGCTGGGAGAAGTTGCACCAAATTGCTTTGGGTGTTGCCAAAGGGATTGAGTATCTCCACCTCGGCTGTGATCATAGAATACTTCACTTTGACATCAATCCTCACAATGTTTTAATAGATGACCATTTCATTCCAAAAATCACCGATTTTGGACTTGCCAAGTTGTGTCCTAAAAATCAAAGTACAGTGTCCATGACTGCGGCCAGGGGAACCTTAGGCTACATTGCCCCTGAAGTTTTCTCAAGAAACTTTGGTAATGTGTCTTATAAGTCTGACATTTACAGTTATGGAATGTTGCTCCTAGAGATGGTGGGAGGAAGAAAGAATACAAATATGTCAGCAGAGGAAAGTTTCCAAGTTCTGTACCCTGAATGGATCCATAATTTGCTCGAAGGCGGAGATGCGCAAGTTACTATTGAGGACGAGGGAGATGTTAAAACTGCTAGGAAACTTGCCATTGTAGGACTTTGGTGCATTCAGTGGAACCCCGTGGACCGTCCATCCATGAAAACTGTGGTACAAATGCTTGAAGGAGATGGAGAAAAGTTAATTGCACCCCCTACTCCTTTTGACAAGACCGGTTCTTCTAGAACAAGTGCAGTTGTTCCAACAAGACACCAGAATTTCGATTTGGAAATTATTCATGAAATAGAAGAGTAA 1806 0.4131 MHFCRHTMLDFQKFSLLLTVLFLLWKPATSKNGCTDKCGRVHIQFPFYLRNSKLNRTTGYPRGFDLLCTDADDTVLELPSVPIKLFVKNIDYTSQQIQIYDPQNCLPSELIKLGNSSISPFKFQSFRERNVSFFRCNLMSCPIVQLGSDEDFIDPEIISCTKVSDVFSVQWQVQDDLRNTVVMEWSKPDCSSCEAQGHKCKYKNGTQGETECFVCPTNRIPTSTIIFIAAGGIVGLMLLLLLVKALFHAYGYYKMKGEDQARIEKFLVDYRAMKPTRFTYADIKRITNGFSESLGEGAHGAVFKGMLSREILVAVKILNDTVGDGKDFINEVGTMGKIHHINVVRLLGFCADGFHRALVYDFFPNGSLQKFVAPPDNKDVFLGWEKLHQIALGVAKGIEYLHLGCDHRILHFDINPHNVLIDDHFIPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNMSAEESFQVLYPEWIHNLLEGGDAQVTIEDEGDVKTARKLAIVGLWCIQWNPVDRPSMKTVVQMLEGDGEKLIAPPTPFDKTGSSRTSAVVPTRHQNFDLEIIHEIEE 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2268 601 Pfam Protein kinase domain 292 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2268 601 Gene3D Transferase(Phosphotransferase) domain 1 363 566 - -
Ssu6g2268 601 PANTHER RUST RESISTANCE KINASE LR10-RELATED 46 600 IPR045874 GO:0004672
Ssu6g2268 601 ProSiteProfiles Protein kinase domain profile. 288 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2268 601 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 46 600 - -
Ssu6g2268 601 Gene3D Phosphorylase Kinase; domain 1 263 362 - -
Ssu6g2268 601 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Ssu6g2268 601 Pfam Wall-associated receptor kinase galacturonan-binding 34 101 IPR025287 GO:0030247
Ssu6g2268 601 SUPERFAMILY Protein kinase-like (PK-like) 270 559 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2268 Ssu-Chr6 50935216 50937103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2268 253 571 Receptor kinase-like Gene Family AT1G66980 50.765 1.02e-101 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ssu6g2268 Pkinase 3.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2268 - - gmx:100819302 1041.95