Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2266 ATGCATGATGCTGGAAAGGTGTCCCCTGGTGATGTCATCATATCCCCTGAGAATTGTGAGACAGAAAAAACATTCCCAAATACAAATATTTCAGCTGGATCTGGTGAAGGGGACacaaatgagataaaaaagagaaaagctagaactcaattaaatattttgagttcAGAGATGGAGTGCTTATCTCCAGACCATGTAAATCCAGTTAGCCCTTTAAGTAATGTGGATGGAGGCTCAAGTCTGTTGTTGAAAGATCCTTCTGAAGTTTTAAATCAATCTGTTCAAAGCTTAGATTCTAACACACAATCCAGCCTGGATGGGGTCACTGCTTTACATGGGAAAGGGGGGGTTTTAGAGGCTCAGGTTTATGTTGGAAATAATGACAATGATGATGCAAATGAGGTTTCACCAGcttctaaaaggaaaaaagtcaCAGCTAGTCACCCAAATTTCACTCAATGTCAATCCGAATTCAGTGCTGTGATTGTGGGTACCACATCTAATGCTGAAGCTCCTATCAGCTTCAGTGATAACCAAGAACATCAGAAAGATGTTGCTTTGTCAAGCATGGGTATGTGTATTCTGTCTACTACTCAGTCAATGCCTTATTCAAAGGATATTACTAAATTGTCTAACAATATTTTCGCTGGAGGATCTTTTGAGTCTATTGATGCAAATAAGGAAACCATGAGTTCTGAGTATTTGAAATTGCAGCACTCAGATATAGTCTCTTTTGCACCATGTGAGGACTTGGCATTTCCAAATGGTCAGCTCTCATCTTTGGAAGGTGAGTGCAAAGAAAACATTACTCCAATTGTGCCTATAAGTAATACTCAAACTGACGTTTTGGCAGTTGGAAATATAATGGGAGAAAAGACTGATTTACAGGCTGTTGAAGAAAATTACAAGTATAGAGACTTTGTGCAAAGGTCTCCAAGGGGGGCTGATATGGAACCTAATGATCTCAATATGAAGAATGATTTGCCTGCTCAGCAGAACCTTATGTCCTGTCCACCCAGTGGTGATGAAGTCACTACTAGTAATTCGAATGACGAATTGATTCAGGATGCATCTGGTGCATTATCAGATATGTTTTCTCAAGGGACGGCATCTGAAGTGCCGGATAGAAGGATTTTAGAATCTACAGCAATCAATGATGAAAATATTTGTGGGGATGAAGAAAATCCAGATAACATATCTATGGTTGAACATGGTTCTGACTTAAATACTTTTACTTCATCAATACAgcagactaaaaaaattatgaagtcACATCATGCAATTGGATGTAGTAACCTGATTACAAAGAAGACAATGTCAGAACCATCCCAAGTTTCTTCCAAAGTTACAACTCAGGCTCTAAGTTCATATCGTTTTGAGTTGAGTGGGACCAAAAATCAGTCAGGTGGTATCATTTCCAAAACTCTTCCAGGTCATTCTTTCACCTTTTCAAAGTCGAAGACAAAGACATCTGCCTCTTCAACTCATGTATCAAAGCCTCGAACTTGGCATCGCACAGGTAATAATCCTCCCACTTTACCTAGAATCAAGCCTTCAGTAGGAACAGTTCCTCCCAAAAGGCCAATTCTAGAAAGGAAAGGGAACTTTCAAAATACCTCTTATGTTCGTAAAGGTAACAGTCTTGTAAGGAAACCTACTCCAGTTTCTGCTCTACCTCAAATCTCCTCTGTTAATCAGTCTTCTTCTTTGGGCTTAGATGAAACACCAAAAAGCATTAAATCTGAAAGCAGGGCTGATGTGACAGATCAACCAATGTACTTGAGAACAGGAGCAACGAATGCTCCTCAGCAGAGGCAGAGAACACCTCCACTACCAATTGATACCAAATCAGAAGAAAATGCATCTTCCTCATTGGTAGAACCTCCTGGTGGTTGCTGTGAAAATGCATCAGATACTAGGAAATTTATAGaaactaataataatgcacCATACTCTTCTGAAGATGCACTGAGGCATTATGAAACTCTAGAAAATCAAACTGGTCCATCTGATAATGGGGAGAGTCAAGTTGAAGCAAACAatggaaatattttttctttgaatacaAAGAGAATAGTGTATATAAAGCCCAAAACAAATCAATTGGTTGCAACATCAAATTCTTGTGATGTTTGTGTCTCTACTGATGACAATGGCCAAACTGCCTTCTCTGATGGCTActacaagagaagaaaaaatcaatTGGTTAGGACTACATTTGAAAGCCATAACAACCAGACAGTTGCAATGCCTAATAGCACTGCAAATTCTGATGGACAAGGAACTAGTAATGCTCTTTGCAACAGGAGGTTTAGTAAGAGGCGGTCACATAAAGTTGCTAGGAGTTCATACAAACGTTCAAGAGCCTCATTAGTGTGGACACTCTGTAGCAAAAATTCTTCTGAAAATGACAGGGACTCGCGGCATTATCAAAAGGTTTTGCCTCAATTGTTTCCATGGAAAAGAGCCACATATTTAAGAAGCTTCATTCATAATTCTACTTCAAGCTTCAATAGTAGTTCCTTATCTGCAATTAGCAAAAAATTGCTTCAGTTCAGAAAGAGGGATACTGTTTACACTAGGTCAACCCATGGGTTTTCACTTTGGAAATCCAGAGTTTTAGGTGTTGGTGGGTGTAGTTTAAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCcgtagagagaaagaagagggaGCAGAAAAATGTGGTTTCCAATGGTTCTCAGTCAAAGAGAGAACGTATATTTCGTATTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGAGGACACTTCAGAGGATTTCAGACGATGAATCCCCGTCCTCTGCATCTAGCTGTTCAGGTTTGGCTTCCAAAAGACCTTACATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCCGAATTGGCAACGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAACTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGAAAGCAGAagtattgtcaattttttactCGATTTGGGAAATGTAAAAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCCTCAAAAATCGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTGACACATAAGGTTATTCCGGAGAGAATGCCagattgttcttattttttgcaAGGCTTATGCTCAAACAGAAATTGTCCATATAGACATGTCAATGTGAACCCCAAGGCATCTATTTGTGAAGGATTTCTCAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACTCAAGGAACCAAATGCAAACTTCACCACCCCAAAAAACAAAGTaagggaaagaaaaggaagagatcTGGAGATCAGCACAACAGTAGAGGGCGTTATTTTGGTTCTATTCCTGCTGATATTTCTGAATCTGGGATGATGGTGGCTCCAAAGCGACATAAACAGAGTGAACTTGAAGAGGAACTTTCTGACTACATCAGGCTTGATATGAATGATGAAGTTAAAGAGGCTGTAGATCAATCATTTGAGCCAGTAGCGTTGTGTGACAACGATTCCTTGGATTTACAATTGGATGATTTTGATGAACTTATTAAACCAGTTGTTCTAATGAAAACAAAGTTCACATTGCAATTACCTCAGTCCAGTAGCCTGCAAGCTTAG 3789 0.3782 MHDAGKVSPGDVIISPENCETEKTFPNTNISAGSGEGDTNEIKKRKARTQLNILSSEMECLSPDHVNPVSPLSNVDGGSSLLLKDPSEVLNQSVQSLDSNTQSSLDGVTALHGKGGVLEAQVYVGNNDNDDANEVSPASKRKKVTASHPNFTQCQSEFSAVIVGTTSNAEAPISFSDNQEHQKDVALSSMGMCILSTTQSMPYSKDITKLSNNIFAGGSFESIDANKETMSSEYLKLQHSDIVSFAPCEDLAFPNGQLSSLEGECKENITPIVPISNTQTDVLAVGNIMGEKTDLQAVEENYKYRDFVQRSPRGADMEPNDLNMKNDLPAQQNLMSCPPSGDEVTTSNSNDELIQDASGALSDMFSQGTASEVPDRRILESTAINDENICGDEENPDNISMVEHGSDLNTFTSSIQQTKKIMKSHHAIGCSNLITKKTMSEPSQVSSKVTTQALSSYRFELSGTKNQSGGIISKTLPGHSFTFSKSKTKTSASSTHVSKPRTWHRTGNNPPTLPRIKPSVGTVPPKRPILERKGNFQNTSYVRKGNSLVRKPTPVSALPQISSVNQSSSLGLDETPKSIKSESRADVTDQPMYLRTGATNAPQQRQRTPPLPIDTKSEENASSSLVEPPGGCCENASDTRKFIETNNNAPYSSEDALRHYETLENQTGPSDNGESQVEANNGNIFSLNTKRIVYIKPKTNQLVATSNSCDVCVSTDDNGQTAFSDGYYKRRKNQLVRTTFESHNNQTVAMPNSTANSDGQGTSNALCNRRFSKRRSHKVARSSYKRSRASLVWTLCSKNSSENDRDSRHYQKVLPQLFPWKRATYLRSFIHNSTSSFNSSSLSAISKKLLQFRKRDTVYTRSTHGFSLWKSRVLGVGGCSLKWSKSIEKNSKQANEEATLAVAAVERKKREQKNVVSNGSQSKRERIFRIGSVRYRMDPSRRTLQRISDDESPSSASSCSGLASKRPYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCKKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKASICEGFLKGYCADGNECRKKHSYVCPTFEATGTCTQGTKCKLHHPKKQSKGKKRKRSGDQHNSRGRYFGSIPADISESGMMVAPKRHKQSELEEELSDYIRLDMNDEVKEAVDQSFEPVALCDNDSLDLQLDDFDELIKPVVLMKTKFTLQLPQSSSLQA 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2266 1262 SMART c3hfinal6 1072 1097 IPR000571 GO:0046872
Ssu6g2266 1262 SMART c3hfinal6 1046 1070 IPR000571 GO:0046872
Ssu6g2266 1262 SMART c3hfinal6 1126 1148 IPR000571 GO:0046872
Ssu6g2266 1262 SMART c3hfinal6 1099 1125 IPR000571 GO:0046872
Ssu6g2266 1262 SMART c3hfinal6 1017 1045 IPR000571 GO:0046872
Ssu6g2266 1262 MobiDBLite consensus disorder prediction 483 554 - -
Ssu6g2266 1262 MobiDBLite consensus disorder prediction 21 36 - -
Ssu6g2266 1262 ProSiteProfiles Zinc finger C3H1-type profile. 1017 1046 IPR000571 GO:0046872
Ssu6g2266 1262 Coils Coil 895 915 - -
Ssu6g2266 1262 PANTHER CCCH ZINGC FINGER 137 1248 - -
Ssu6g2266 1262 MobiDBLite consensus disorder prediction 483 515 - -
Ssu6g2266 1262 ProSiteProfiles Zinc finger C3H1-type profile. 1072 1098 IPR000571 GO:0046872
Ssu6g2266 1262 MobiDBLite consensus disorder prediction 593 624 - -
Ssu6g2266 1262 MobiDBLite consensus disorder prediction 941 963 - -
Ssu6g2266 1262 Gene3D - 1100 1162 - -
Ssu6g2266 1262 Gene3D - 1044 1099 - -
Ssu6g2266 1262 MobiDBLite consensus disorder prediction 21 42 - -
Ssu6g2266 1262 ProSiteProfiles Zinc finger C3H1-type profile. 1099 1126 IPR000571 GO:0046872
Ssu6g2266 1262 MobiDBLite consensus disorder prediction 1142 1162 - -
Ssu6g2266 1262 MobiDBLite consensus disorder prediction 1139 1172 - -
Ssu6g2266 1262 MobiDBLite consensus disorder prediction 567 635 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2266 1023 1152 C2H2 Transcription Factor Family AT2G32930 31.618 3.97e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu6g2266 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2266 - - gmx:100788859 2012.65