Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2263 ATGTCTAGTACGGCTGGCAAGGTCATCAGGTGCAGAGCTGCGGTGGCATGGGAAGCAGGGAAGCCACTATCGGTAGAAACCATAGAAGTAGCACCACCCCAGAAAGGTGAAGTGCGTTTGAAGATCCTCTTCAACTCCCTTTGTCGTACTGATGTTTACTGGTGGGATGCCAAGGGCCAGAATCCGTTGTTTCCTCGTATCTTGGGTCATGAAGCTGCAGGGGTTGTGGAGAGCGTGGGCGAGGGTGTGACAAATCTGAAACCAGGTGACCATGCACTCCCAATATTCACCGGGGAGTGTGGGGAATGCACTCATTGCAAGTCAGAAGAGAGCAACCTGTGTGAGCTACTCAGGATCAACACTGACAGAGGAGTTATGCTCAGTGATGGCAAAACAAGGTTTTCCAAAAATGGACAACCCATTTACCACTTTGTCGGAACCTCCACATTCAGTGAATACACTGTTCTCCATGCTGGGTGTGTTGCCAAGATCAACCCTGCTGCCCCACTTGACAAAGTTTGTATTGTCAGTTGCGGATTTTGCACAGGTTTTGGTGCTACTGTAAATGTTGCAAAACCAAAGCCTAATGCTACTGTTGCTGTCTTTGGATTAGGAGCTGTTGGTCTTGCTGCTTGTGAAGGGGCAAGGGTTTCTGGTGCATCCAGAATCATCGGGGTTGATTTACTTCCTAATCGATTTGAACAAGCCAAAAAATTTGGGGTCACTGAATTTGTGAACCCGAAAGATCATGACAAACCAGTACAACAGGTCATTGCTGAAATGACCAATGGAGGAGTAGATCGTGCTATTGAATGCACTGGAAGCATCCAAGCTTCGATCTCAGCATTTGAATGTACTCATGATGGTTGGGGTACTGCTGTACTTGTTAGTGTGCCAAAGAAAGATGTTGAATTCAGAACTCATCCTATGAATTTCATGGAAGGGAGAACTCTAAAGGGTACCTTCTATGGCCACTACAAACCCCGCACTGATATTCCTTCTGTTGTGGAGAAGTACCTAAACAAGGAGCTGGAACTGGACAAATTCATCACTCACACTGTGCCATTCTCGGAGATCAACAAGGCATTTGAACTTATGCTGAAAGGGGAGGGCATAAGGTGCCTCATCCGCATGGAAGAGTAA 1143 0.4689 MSSTAGKVIRCRAAVAWEAGKPLSVETIEVAPPQKGEVRLKILFNSLCRTDVYWWDAKGQNPLFPRILGHEAAGVVESVGEGVTNLKPGDHALPIFTGECGECTHCKSEESNLCELLRINTDRGVMLSDGKTRFSKNGQPIYHFVGTSTFSEYTVLHAGCVAKINPAAPLDKVCIVSCGFCTGFGATVNVAKPKPNATVAVFGLGAVGLAACEGARVSGASRIIGVDLLPNRFEQAKKFGVTEFVNPKDHDKPVQQVIAEMTNGGVDRAIECTGSIQASISAFECTHDGWGTAVLVSVPKKDVEFRTHPMNFMEGRTLKGTFYGHYKPRTDIPSVVEKYLNKELELDKFITHTVPFSEINKAFELMLKGEGIRCLIRMEE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2263 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Ssu6g2263 380 CDD alcohol_DH_plants 9 377 - -
Ssu6g2263 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Ssu6g2263 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Ssu6g2263 380 Pfam Zinc-binding dehydrogenase 206 333 IPR013149 -
Ssu6g2263 380 Gene3D - 19 370 - -
Ssu6g2263 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Ssu6g2263 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Ssu6g2263 380 Gene3D - 183 321 - -
Ssu6g2263 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Ssu6g2263 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2263 Ssu-Chr6 50684591 50690232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2263 1 370 Monolignol Biosynthesis Gene Families AT1G72680 25.333 2.55e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2263 K18857 - gmx:100775490 720.694