Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2260 ATGGAAACTGAGGATGGAACTAGCAATGGTGATAACGGTGAATGGGCTGGGTCAGATCGGAGGTTGGATTCTGAAGATGTAGATAATTGGGGGAGAATTCAAGGTGGAAATGATGTTGCGGAAGACGGGGAAGAAGATCGGGGCTTGAAGGATGAAGCTGTAAATAATGGGGTTATGATTGAAGGTGGAAATGGTATTGTTGAAGGTGAAGAAGTTTGGGGTTTGAAGGAGGCTGTAAATAATGAGGTGGCAATTGAAGTTGGAAATGGTGTTGCTGAAGGTGAAGAAGTTCGGGGCTTGAAACACGAAGCTGTAAATAATGGGGTGACACTTGAAGGAGGAAATGGTGTTGCAGAAAGTAAAGAAGTTTGGGGTTTGAAGAATGAAACTGTAAATACTGGGTTGGCGGTTGAAGGTGGAAATGGTGTTGCTGAAGGTGAAGAAGTTCAGGACTTGAAAAATGAAACTGTAAATAATATGGCAATTGAGGGTGGAAATGGTGTTGCTGAAGGTGAAGAAGTTTGGGTCTTGAAGAACGAAGTTATAAATAGCGGGGTGGCAATTGCTGATGGGAATGGTGTTGCTGAAGATGGAGAGGTTTCGGGCTCGAATACTGAAGCTGCTAATGTTGGGGTTGCAATTTCTGATGGAAATGGTGTTGCTGAAGGTGGAGAAGTTTGGGGCTCAAAGAATGAAGCTGTAAATAATGAGGTGGTAATTGCTGATGGAAATGTTGTTGCTTACAGTGGAGAAGTTCAGGACTCAAAGAACGAAGCTGTAAATAATGAGATGGTAATTGCAGATGGGAATGGTGTTACTGAAGGTGAAGAGGTTCACTGCTTGAAGAATGGAACTGTAGATAATGTAGTGGCAATTGCAGATGGGTTTGGTGTTGTTGAAGGGTACTCTGGTGCAATTGAATGTTTTCGAACATATAAGAGGCGCAAGCATGTAAAGTCGAGTTCAGAATTTAAAGTCCAGGAAGACAGCAAACAACCTATGGAAGCTGCAAGTCACCTGTCAGACCAGGCGGTGAAGAGACCATGTGATTTACCTGTAGGCAACACTTCAAAAGATTATTCACGTGACAATTGGGGGAATATTGTACTAAAGCATTTATATCATTCATTAGGCAATGATAATGGCAGCATGGAGTGGTGTATAAGGGAAGCACTCATGAGTCGTCCTAAAATTAGTTGTGCCACCACAATGACAGTTGGTCCTGCAGAAACTCTTAAAATTGACAAGGATGGTCAAGAAAGCTCTTTGCAATTAGAGTGTTTGTTTTATAGATTACAGAGTGAAGCTAATGGACATGCAAATGTCATGCATAATGGATTTTCTGGTGAGTCAGATGGCCGTGGTGCAACTGAGAGCTGTCAGTGTGTATTCCGTGATATCTTAGCCTCTGAGAAGTTCAGTTCATTATGTAAAGTGCTACTTGAAAATTTCCAAGGAATGAAACCTGATAGTGTATTTGACTTTAGTGTGGTAAACTCAAGGATGAAAGGGCGAGCTTATGAACAATCGCCTACACTTTTCTTATCAGATGTTCAACagGTTTGGCAAAAGCTTCAAAATACTGGAAATCAGATTGTTGCTATAGCAAAGAGCCTCTCCAACATGTCAAAAGCTTCCTTCTATGAGCAGGTGGGAATTTCAGTGCAGAGCTCCTTTGAAGATGAAAAGCAAGTGGAATTCATCTCTCACATGAAACCAGAGCAGACAGTAGAATGTGTTACATACAAAGTTGGCTCTTGCAGGCATTGCGGAGACAAAGCAGATGGGACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTATCATCTCTCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCGCAAAAGCTGGTTCTGTGCCAATTGTACTGCTAGTGGAATTGGATGTCGACATGAGAATTGTGTGGTGTGTGAACGGTTGAATGTCCCAAAGACCCTGGATGACGTTGTTGGTGAGAAAAGCATCCCTACAAATGAGGAAACACTGAATGAATTGAAGAGAACTCAAATTGTACTTATGATGGGATTCAAGTTTCCACAGGTGGGAGAATCCCATCTGActgcaaaatttgtaaaatggtggtggatggtgaaaaaataa 2127 0.4133 METEDGTSNGDNGEWAGSDRRLDSEDVDNWGRIQGGNDVAEDGEEDRGLKDEAVNNGVMIEGGNGIVEGEEVWGLKEAVNNEVAIEVGNGVAEGEEVRGLKHEAVNNGVTLEGGNGVAESKEVWGLKNETVNTGLAVEGGNGVAEGEEVQDLKNETVNNMAIEGGNGVAEGEEVWVLKNEVINSGVAIADGNGVAEDGEVSGSNTEAANVGVAISDGNGVAEGGEVWGSKNEAVNNEVVIADGNVVAYSGEVQDSKNEAVNNEMVIADGNGVTEGEEVHCLKNGTVDNVVAIADGFGVVEGYSGAIECFRTYKRRKHVKSSSEFKVQEDSKQPMEAASHLSDQAVKRPCDLPVGNTSKDYSRDNWGNIVLKHLYHSLGNDNGSMEWCIREALMSRPKISCATTMTVGPAETLKIDKDGQESSLQLECLFYRLQSEANGHANVMHNGFSGESDGRGATESCQCVFRDILASEKFSSLCKVLLENFQGMKPDSVFDFSVVNSRMKGRAYEQSPTLFLSDVQQVWQKLQNTGNQIVAIAKSLSNMSKASFYEQVGISVQSSFEDEKQVEFISHMKPEQTVECVTYKVGSCRHCGDKADGTDCLVCDSCEEMYHLSCIEPAVKEIPRKSWFCANCTASGIGCRHENCVVCERLNVPKTLDDVVGEKSIPTNEETLNELKRTQIVLMMGFKFPQVGESHLTAKFVKWWWMVKK 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2260 708 ProSitePatterns Zinc finger PHD-type signature. 587 631 IPR019786 -
Ssu6g2260 708 Gene3D - 474 634 - -
Ssu6g2260 708 SUPERFAMILY FYVE/PHD zinc finger 560 632 IPR011011 -
Ssu6g2260 708 PANTHER D4, ISOFORM A 367 639 - -
Ssu6g2260 708 SMART PHD_3 586 632 IPR001965 -
Ssu6g2260 708 MobiDBLite consensus disorder prediction 1 47 - -
Ssu6g2260 708 ProSiteProfiles Zinc finger PHD-type profile. 584 634 IPR019787 -
Ssu6g2260 708 PANTHER HISTONE ACETYLTRANSFERASE 367 639 - -
Ssu6g2260 708 Pfam PHD-finger 587 633 IPR019787 -
Ssu6g2260 708 MobiDBLite consensus disorder prediction 320 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2260 Ssu-Chr6 50614960 50622539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2260 460 631 C2H2 Transcription Factor Family AT3G01460 26.396 6.65e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu6g2260 PHD 1.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2260 - - gmx:100810450 904.049