Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2245 ATGGCCACCAAAGCTGAAGGCATCCAAGAAGAAGAAATGTCAAAATCCTATGACATATTACATAACTGTTCATCAAACTATGTTGTAACCCTCGCACAGAAGGTGATCGCAGAAGTCATTGGCACATATTTTGTGGTATTTGCTGGTTGCGGCTCTGTGGCAGTGAATAAGATATATGGCTCAGTCACATTTCCAGGCGTTTGTGTCACGGGGGGGCTGATTGTAATGGTCACGATTACTCTGTTGGTCATATCTCAGGAGCTCACTTCGATCCTGCAGTCACCATCACTTTAG 294 0.4456 MATKAEGIQEEEMSKSYDILHNCSSNYVVTLAQKVIAEVIGTYFVVFAGCGSVAVNKIYGSVTFPGVCVTGGLIVMVTITLLVISQELTSILQSPSL 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2245 97 PANTHER AQUAPORIN NIP4-1-RELATED 12 79 - -
Ssu6g2245 97 PANTHER AQUAPORIN NIP2-1 12 79 IPR034294 -
Ssu6g2245 97 Gene3D Glycerol uptake facilitator protein. 2 85 IPR023271 -
Ssu6g2245 97 SUPERFAMILY Aquaporin-like 30 81 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2245 Ssu-Chr6 49360363 49360807 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2245 1 79 Major Intrinsic Protein MIP AT5G37810 50.000 2.49e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2245 K09874 - gmx:100791338 119.398