Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2242 ATGGCCACCAAAGCTGAAGGCATCCAAGAAGAAGAGATGTCAAGTATGGAAAAGGGTGTTTCCCCTAGCCCTTTCAGAACCTATGACATATTGCATAACTGTTCATCAAACTATGTTGTAACCCTCGCACAGAAGGTGATCGCAGAAGTCATTGGCACATATTTTGTGGTATTTGCTGGTTGCGGCTCTGTAGCAGTGAATAAGATATATGGCTCAGTCACATCTCCAGGCGTTTGTGTCACGTGGGGGCTGATTGTAATGGTCATGATTTACTCTGTTGGTCATATCTCAGGAGCTCGCTTCGATCCTGCAGTCACCACCACTTTTGGCCAGCTTTCGCCGGTTCTCATATAA 354 0.4605 MATKAEGIQEEEMSSMEKGVSPSPFRTYDILHNCSSNYVVTLAQKVIAEVIGTYFVVFAGCGSVAVNKIYGSVTSPGVCVTWGLIVMVMIYSVGHISGARFDPAVTTTFGQLSPVLI 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2242 117 Pfam Major intrinsic protein 40 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu6g2242 117 PANTHER AQUAPORIN NIP-TYPE-RELATED 1 110 - -
Ssu6g2242 117 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g2242 117 Gene3D Glycerol uptake facilitator protein. 4 114 IPR023271 -
Ssu6g2242 117 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu6g2242 117 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu6g2242 117 PANTHER AQUAPORIN NIP2-1 1 110 IPR034294 -
Ssu6g2242 117 SUPERFAMILY Aquaporin-like 41 109 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2242 Ssu-Chr6 49188673 49189142 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2242 1 109 Major Intrinsic Protein MIP AT5G37810 56.364 1.33e-35 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2242 K09874 - gmx:100791338 169.474