Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2240 atgGAATGGGTTTGTGAAGGAGTGAAGAGGAAAGATAGCGTGAGAGAGAAGTTGAGAAGaCATTCAGCAACTTCAAACAAAGTTATCATGAGCTTTGTTGAAGTCAAACCTTTGGAATTGGTTTACTACAAGGTATGCAAAGATGGCTTGATCCGACATTTCTTTCACCTTCCTTCCAAAGCATACAAGACCAAAAAACAGAAAAGGAGGAAGGTGAGCACAGATACAGACGGCAGTGAGACTTGGTGGCACAACACAGGTAAGACTAGGCCAATCTACATCAGTGGCAAGTTAAAAGGGTACAAGAAAATTCTTGTGCTTTACACTAACTACAGAAAACAAATGAAGCCAGAGAAACCAAATTGGGTCATGCACCAGCACCAGTACCACCTTGGCAACAATGAAGAGGAGAAGGAAGGGGAGTTGGTGCTCTCCAAAGTTTTCTATCAAACACAATCTAGACAACGTGGTTCACTGTTGAAAGACTCATATCCAGCAAAACTAATCATAAAAACTACTACATTAAAAACGTGTTACTAA 540 0.4037 MEWVCEGVKRKDSVREKLRRHSATSNKVIMSFVEVKPLELVYYKVCKDGLIRHFFHLPSKAYKTKKQKRRKVSTDTDGSETWWHNTGKTRPIYISGKLKGYKKILVLYTNYRKQMKPEKPNWVMHQHQYHLGNNEEEKEGELVLSKVFYQTQSRQRGSLLKDSYPAKLIIKTTTLKTCY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2240 179 Pfam No apical meristem (NAM) protein 21 127 IPR003441 GO:0003677|GO:0006355
Ssu6g2240 179 ProSiteProfiles NAC domain profile. 1 150 IPR003441 GO:0003677|GO:0006355
Ssu6g2240 179 Gene3D NAC domain 12 155 IPR036093 GO:0003677|GO:0006355
Ssu6g2240 179 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 44 168 IPR044799 GO:0003700
Ssu6g2240 179 SUPERFAMILY NAC domain 33 150 IPR036093 GO:0003677|GO:0006355
Ssu6g2240 179 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 44 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2240 Ssu-Chr6 48939482 48940665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2240 45 167 NAC Transcription Factor Family AT4G28500 68.548 1.33e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu6g2240 NAM 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2240 - - gmx:100791648 193.741