Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2238 ATGGCCACCAAAGCTGAAGGCATCCAAGAAGAAGAAATGTCAAGTATAATCTATGACATATTACATAACTGTTCATCAAACTATGTTGTAACCCTCGCACAGAAGGTGATCGCAGAAGTCATTGGCACATATTTTGTGGTATTTGCTGGTTGCGGCTCTGTGGCAGTGAATAAGATATATGGCTCAGTCACATTTCCAGGCGTTTGTGTCACGGGGGGGCTGATTGCAATGGTCACGATTACTCTGTTGGTCATATCTCAGGAGCTCACTTCGATCCTGCAGTCACCATCACTTTAG 297 0.4444 MATKAEGIQEEEMSSIIYDILHNCSSNYVVTLAQKVIAEVIGTYFVVFAGCGSVAVNKIYGSVTFPGVCVTGGLIAMVTITLLVISQELTSILQSPSL 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2238 98 SUPERFAMILY Aquaporin-like 31 82 IPR023271 -
Ssu6g2238 98 PANTHER AQUAPORIN NIP2-1 16 80 IPR034294 -
Ssu6g2238 98 Gene3D Glycerol uptake facilitator protein. 3 87 IPR023271 -
Ssu6g2238 98 PANTHER AQUAPORIN NIP4-1-RELATED 16 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2238 Ssu-Chr6 48910158 48910601 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2238 1 80 Major Intrinsic Protein MIP AT5G37810 47.778 9.38e-20 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2238 K09874 - gmx:100803763 118.627