Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2233 ATGACCTTATACAAAGGACCTATAGTGGAGATGGTATGGGCCAAACACAGTCATCCACACAATAAAACCAGTGCAACAAGCACCACAGGATCATTGGACAAAGATTGGTTCTTAGGCTGCATCTTTCTTATCATTGCCACCCTTGCTTGGGCTTCCCTTTTTGTTTTCCAAGCCAAAGCTATACAAACGTACAAGAATCATCAGATAAGCCTCACTTCACTTATGTGCTTTATAGGCACTCTTCAAGCTATTGCTGTTACTTTTGTTGTTGAGAACAATCCTTCTGTATGGAGAATTGGCTGGGATATGAACTTACTTGCTGCTGCCTATGCTGGGATTGTGACCTCAAGCATATCATACTATGTACAAGGACTGGTAATTAAGAGGAAAGGGCCTGTCTTCGCAACTGCCTTTAGCCCTTTAATGATGATCATTGTTGCCATCATGGGGTCCTTTATCCTTGCGGAACAAATTTATCTCGGAGGTGTGATTGGTGTCATCTTAATTGTTATAGGTTTATACTCAGTTCTGTGGGGAAAGCACAAAGAACAAATAGAGAGCAAAGTGGCAGATGAAATTCCCTTGCCTGTAAAGGATGCTCAAATTGCCGTAATTGCAGGGCCAGTGATTGATGCCACAGATAATTTTACCGAAGAAAAATATGGTCAGAAAGGAGAAGCCAACAACAAGCTATCTTCAGTCCTAATAACTATGCCTATTCCAGAGCCTTCCATGAAAGCTAACCAAGAGGCAAAGGCTTAA 762 0.4173 MTLYKGPIVEMVWAKHSHPHNKTSATSTTGSLDKDWFLGCIFLIIATLAWASLFVFQAKAIQTYKNHQISLTSLMCFIGTLQAIAVTFVVENNPSVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVIKRKGPVFATAFSPLMMIIVAIMGSFILAEQIYLGGVIGVILIVIGLYSVLWGKHKEQIESKVADEIPLPVKDAQIAVIAGPVIDATDNFTEEKYGQKGEANNKLSSVLITMPIPEPSMKANQEAKA 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2233 253 Pfam EamA-like transporter family 38 177 IPR000620 GO:0016020|GO:0016021
Ssu6g2233 253 SUPERFAMILY Multidrug resistance efflux transporter EmrE 88 182 - -
Ssu6g2233 253 PANTHER WAT1-RELATED PROTEIN 1 215 - -
Ssu6g2233 253 PANTHER WAT1-RELATED PROTEIN 1 215 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2233 Ssu-Chr6 48437199 48439270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2233 1 246 Nodulin-like Gene Family AT5G07050 56.471 5.68e-93 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2233 - - gmx:100804390 445.277