Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2223 ATGTCCtctcaaatttggtttttactTAAAAGCCACGTACATTACAAGGTGTGCAGAAATTGGAAGCAGAGGTGCTTATGGTTCGAAATTAAAATACCCACTTGTGGGTTTTGCTTAGTGATGAGCATGGAAATTCCTATCCCGTCTTACGTCGTGGTTGCATGTGATGCCACGAAGGATCGCAATGAGCAAGAGGTCAAGCTTGTCGTTGACCACCTTCGAAGCAGGGGTGACATTCTCTCTGCAAGTGATAGCTTGCTTGTGCTCGGTGCCTTGCATAAGGTGCCTCACCCAATGGGGTACCAGACACTAGCATGCCCGGAGTCCTTTGCTGGAACAAATATTCGTGCAATGGAGGAAGAAGTTAACAGAAAAGTTGAAGCATATAAAAGTGTGCTTCTGCCGAGTTATGAAGAACGTGGAAATAAAGGgGTTAGAATCGAGGTTAAAGTCACTGCAGGTTTTCCAATTAGACAGGTTATTTTACAAGAGGTTACAAACTACAAAGCATCTTGGGTTGTTCTTGATAGGCATCTTCGGCGTGACCTGAGATTCTACAGGAACAAGATATCATGTAAAGTTGCATTGGTTAAAGATGACTTGTCAGTGGATATTTGGAGATCTCATCATATACCTGAAACAGATGTCAAAGAACAAAAGCTTATCTATTCTTTGTCCAAGTGTGTTTCATTATCAGATTCTCATAATACTGGAGAAGAGGAGCAATCTGTTGTCATTTGCAAAAGTTATCCTCCTTCCATTGCTTCTGACAGCTCTAATATGTCTAAGAGCAGTACGAAACATTCAAATGCTAACAAGTTAGGGGAGCATAATTCTTTAATAGATTTTGGATCTTCTTCAGGCATAAGCACTAAAGGAGAATATAAGCATCCcattaattctcaaattttggGAAAGCAAAACAAATATGGCTTTTTACCAAACTCTTCAGATGCTCCAATTCTTTGTGCTGGTTGTGGGACACAGACTGCATTGTACACCAACGAGTTAAAGAGGTTCAGCTATTCTGAGATACAGCTTGCaacaaatgatttttcaaagGATAACTTACTAGGTGAAGGTGGATACGGTCACGTATACAGGGGTATGCTTAAAGATGGGCAACAAATAGCTGCTAAGGTaaggaaagaagaaagtaaACAAGGGCTTTCTGAATTCAATTCTGAGGTTTACGTGTTGAATTTTGCTCGGCACAAGAATATAGTGATGCTTTTGGGTTACTGTTTCAAAGAAAGGCTAAATATTTTGGTATATGAATATATTTGCAACAAGTCTCTTCATTGGCATTTATTTGATAAAAATGCGGCAGTTCTTGAGTGGCACCAAAGATATGCCATTGCCATTGGGACTGCAAAAGGATTGCGTTTTCTACATGAGGAATGTCGTGGAGGTCCTATCATTCATCGTGACATGAGACCAAGCAATATACTcctcactcatgattttgttcCCATGCTAGGTGACTTTGGCCTTGCCAAATGGAAGACTAGTGATAAGACTCTACACACAAGGATAATGGGCACATTAGGATACCTTGCCCCTGAGTATGCTGAAGATGGTATTGTTTCTGTGAGAATAGATGTGTATGCTTATGGCATCATTCTGTTACAATTGATAACAGGACGCAAGGCAACTTCTAGTCCAGAGCAACATCTCTCCCTTCGACAATGGGCTGAGCCCAAGATTGAGGAGTTAGCATTTCATGAACTTATAGATTCTCGTCTAGGGGATTCATACAACACAAATGAACTATATATCATGGCCAAGGTAGCATACTACTGTGTGCAAAGAGATCATGAGAAGCGCCCGTCTATTAGAGAGCAAACAGTGATGGCAAGACTCACTCCCCCTCTCAGCATCTTCACACAATCCCATTATTGGTGCCCACTTCTGTGTAGCCACAACACTAAACACGCCCTAACTGCTGCAAGTAACGTCTCTTCCTTCACCATGTTAGCTCGAACGCCCAAATCACAAGACGAAGGAACAACCACTGTTAAGCTTTCTACGCAAATTGGGGGTTCTGCTCAAGCACTTCACCACTACGACAAGGCATGA 2079 0.4016 MSSQIWFLLKSHVHYKVCRNWKQRCLWFEIKIPTCGFCLVMSMEIPIPSYVVVACDATKDRNEQEVKLVVDHLRSRGDILSASDSLLVLGALHKVPHPMGYQTLACPESFAGTNIRAMEEEVNRKVEAYKSVLLPSYEERGNKGVRIEVKVTAGFPIRQVILQEVTNYKASWVVLDRHLRRDLRFYRNKISCKVALVKDDLSVDIWRSHHIPETDVKEQKLIYSLSKCVSLSDSHNTGEEEQSVVICKSYPPSIASDSSNMSKSSTKHSNANKLGEHNSLIDFGSSSGISTKGEYKHPINSQILGKQNKYGFLPNSSDAPILCAGCGTQTALYTNELKRFSYSEIQLATNDFSKDNLLGEGGYGHVYRGMLKDGQQIAAKVRKEESKQGLSEFNSEVYVLNFARHKNIVMLLGYCFKERLNILVYEYICNKSLHWHLFDKNAAVLEWHQRYAIAIGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWKTSDKTLHTRIMGTLGYLAPEYAEDGIVSVRIDVYAYGIILLQLITGRKATSSPEQHLSLRQWAEPKIEELAFHELIDSRLGDSYNTNELYIMAKVAYYCVQRDHEKRPSIREQTVMARLTPPLSIFTQSHYWCPLLCSHNTKHALTAASNVSSFTMLARTPKSQDEGTTTVKLSTQIGGSAQALHHYDKA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2223 692 ProSitePatterns Tyrosine protein kinases specific active-site signature. 473 485 IPR008266 GO:0004672|GO:0006468
Ssu6g2223 692 Gene3D Phosphorylase Kinase; domain 1 326 427 - -
Ssu6g2223 692 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Ssu6g2223 692 PANTHER RECEPTOR-LIKE KINASE 48 618 - -
Ssu6g2223 692 CDD USP_Like 107 184 - -
Ssu6g2223 692 Pfam Protein kinase domain 353 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2223 692 PANTHER OS01G0253100 PROTEIN 48 618 IPR045271 GO:0004714|GO:0006468
Ssu6g2223 692 SUPERFAMILY Protein kinase-like (PK-like) 335 632 IPR011009 -
Ssu6g2223 692 ProSiteProfiles Protein kinase domain profile. 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2223 692 Gene3D Transferase(Phosphotransferase) domain 1 429 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2223 Ssu-Chr6 48101710 48121595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2223 328 614 Trihelix Transcription Factor Family AT5G38560 43.919 3.43e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Ssu6g2223 Pkinase 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2223 - - vun:114163670 818.92