Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2216 ATGGCCGATTCTTCAGCAGCTGGTGAGGACATGGCCAATAAGTATTGTCCACGTTTTTATCATTGGAAGCTCGCAGAGGATGAAAAGCTCCGTCAACTTGTTCGACAACATGGTCCCCATAACTGGGATTCAATTGCTGAGAACCTTGAAGGAAGATCAGGGAAAAGCTGCAGATTAAGGTGGCTCAATCATCTTGACcctaaagttaataaaaaaccATTTACAGAAGAGGAAAATGAGAGGCTACTTGCGGCTCGCGAAGTTTATGGGAACAAGTGGGCAGCTATAGCCAAGCTCTTCCCAGGTAGAACCCCTGATGGTGTTAAGAATCAGTGGAACCTTACAATGGCACAAAAGCAAAGGGAGGATTATAAGAAGAGAAGCTTCCGAGACCATAATACCGCTTCAAACACTTCCTCTAGCAACAGTCTTCCCAATAAAGGAGCACTTGCAAAACCTTATGAACCATTGTATTACATGAGGGGCCTATACAGTGAAGAAAGTGCTTCTTCTTCCTCAGAGAAAGAGTCAAAGGATAGTGGACAGAAAGAAGTTCCTTTCTATGATTTTCTTGGTGTCGGTGGGTCTGATGACCAGTGA 600 0.4317 MADSSAAGEDMANKYCPRFYHWKLAEDEKLRQLVRQHGPHNWDSIAENLEGRSGKSCRLRWLNHLDPKVNKKPFTEEENERLLAAREVYGNKWAAIAKLFPGRTPDGVKNQWNLTMAQKQREDYKKRSFRDHNTASNTSSSNSLPNKGALAKPYEPLYYMRGLYSEESASSSSEKESKDSGQKEVPFYDFLGVGGSDDQ 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2216 199 MobiDBLite consensus disorder prediction 119 149 - -
Ssu6g2216 199 MobiDBLite consensus disorder prediction 133 147 - -
Ssu6g2216 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Ssu6g2216 199 Pfam Myb-like DNA-binding domain 22 82 - -
Ssu6g2216 199 SUPERFAMILY Homeodomain-like 20 112 IPR009057 -
Ssu6g2216 199 MobiDBLite consensus disorder prediction 168 199 - -
Ssu6g2216 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 69 IPR017930 -
Ssu6g2216 199 PANTHER MYB PROTEIN-RELATED 10 135 - -
Ssu6g2216 199 SMART sant 70 118 IPR001005 -
Ssu6g2216 199 SMART sant 18 67 IPR001005 -
Ssu6g2216 199 PANTHER OS08G0435700 PROTEIN 10 135 - -
Ssu6g2216 199 Gene3D - 20 70 - -
Ssu6g2216 199 Gene3D - 72 145 - -
Ssu6g2216 199 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Ssu6g2216 199 ProSiteProfiles Myb-like domain profile. 22 65 IPR001005 -
Ssu6g2216 199 CDD SANT 73 113 IPR001005 -
Ssu6g2216 199 CDD SANT 22 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2216 Ssu-Chr6 47860627 47862059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2216 21 193 MYB Transcription Factor Family AT1G17950 41.969 4.84e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g2216 Myb_DNA-bind_6 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2216 K09422 - tcc:18592495 177.178