Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2215 ATGGCCAATAAGTATTGTCCACCTGTTTATCATTGGAAGCTTGCTGAAGATGGAAAGCTCAGTCAACTTGTTCATCAACAGCATGGTCCCCATAACCGGGATTCAATTGCTGAGAACCTTGAAGGAAGAACAGGGAAAAACTGCAGATTAAGGTGGCTCAATTATGTTGATcctaaacttaataaaaatccATTTACAGAAGAGGAAAATGAAAGGATAGTTGCAGCTCGCGCGAAGGTTATGGGACTAAATGGGCAGCTATAG 264 0.3939 MANKYCPPVYHWKLAEDGKLSQLVHQQHGPHNRDSIAENLEGRTGKNCRLRWLNYVDPKLNKNPFTEEENERIVAARAKVMGLNGQL 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2215 87 CDD SANT 12 56 IPR001005 -
Ssu6g2215 87 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 11 78 - -
Ssu6g2215 87 Gene3D - 10 61 - -
Ssu6g2215 87 Pfam Myb-like DNA-binding domain 12 72 - -
Ssu6g2215 87 ProSiteProfiles Myb-like domain profile. 12 56 IPR001005 -
Ssu6g2215 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 60 IPR017930 -
Ssu6g2215 87 PANTHER MYB PROTEIN-RELATED 11 78 - -
Ssu6g2215 87 SUPERFAMILY Homeodomain-like 11 76 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2215 Ssu-Chr6 47834268 47835359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2215 11 76 MYB Transcription Factor Family AT1G17950 60.606 1.46e-24 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g2215 Myb_DNA-bind_6 6.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2215 K09422 - pop:7491721 97.0561