Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2214 ATGCGTCCAGCCATTTTGCAATATGCAATGTCAACTGAAGGTAAAAGCTGCAGATTAAGGTGGCTCAATCATCTTGATcctaaagttaataaaaaaccATTTACAGAAGAGGAAAATGAGAGGCTACTAGCGGCTCGCGAAGTTTATGGGAACAAGTGGGCAGCTATAGCCAAGCTCTTCCCAGGTAGAACCCCTGATGGTGTTAAGAATCGGTGGAACCTTACAATGGCACGGAAGCGAAGGGAGGAATCTAAGAAGAGATGCTTCCAAGACCATAATACCGCTTCAGACACTTCCTTTAGCAACAGTCTTCCCAATAAAGGAGCACTTGCAAAAACTCATGAACCATTCTATTACATTAGGGACCCATACTGTAAAGTAAGGGCTTCTTCTTCCTCAGAGAAAGAGTCAATGGATAGTGGACAGAAAGAAGTTCCTTTCTATGATTTTCTTGGTGTTAGTGGGTCTGATGACCAGTGA 480 0.4188 MRPAILQYAMSTEGKSCRLRWLNHLDPKVNKKPFTEEENERLLAAREVYGNKWAAIAKLFPGRTPDGVKNRWNLTMARKRREESKKRCFQDHNTASDTSFSNSLPNKGALAKTHEPFYYIRDPYCKVRASSSSEKESMDSGQKEVPFYDFLGVSGSDDQ 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2214 159 MobiDBLite consensus disorder prediction 83 107 - -
Ssu6g2214 159 MobiDBLite consensus disorder prediction 93 107 - -
Ssu6g2214 159 SMART sant 30 78 IPR001005 -
Ssu6g2214 159 ProSiteProfiles Myb-like domain profile. 26 76 IPR001005 -
Ssu6g2214 159 Pfam Myb-like DNA-binding domain 31 73 IPR001005 -
Ssu6g2214 159 Gene3D - 32 102 - -
Ssu6g2214 159 SUPERFAMILY Homeodomain-like 10 81 IPR009057 -
Ssu6g2214 159 CDD SANT 33 73 IPR001005 -
Ssu6g2214 159 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 12 103 - -
Ssu6g2214 159 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 80 IPR017930 -
Ssu6g2214 159 PANTHER MYB PROTEIN-RELATED 12 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2214 Ssu-Chr6 47828743 47829982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2214 4 87 MYB Transcription Factor Family AT1G17950 58.333 4.64e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g2214 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2214 K09422 - jre:108980519 121.709