Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2213 ATGGCCGATTCCTCACAAGCTGCTGAGGGCATAGCTAATAAGTATCGTCCACGTGTTAATTACTGGAAGGTCGCTGAGGATGAAAAGCTCCGCCAACTTGTTCAACAACATGGTCCCCATGACTGGAATTCAATTGCTGAGCATTTAGAAGGAAGAACAGGGAAAAGCTGCAGATTGAGGTGGGTCAATCATCTTGATCCTAGACTTAATAGAAATCCATTTACAGAAGAGGAAGACGAGAGGCTACTTGCAGCTCGCGAGCTTTATGGGAACAAGTGGTCAACAATAGCCAAGCTCTTCCCGGGGCGAACCGATAATGCCGTGAAGAATCATTGGCATGTCGTGATGGCAAGAAAACGAAGGGAGGAAACTAAGAAGAGAAGATTCCAAGAGCTTAATAACGATTCAAACAACACTTCCTCCTCCACCAACAGTGTTTCCCATCACAATAGAGCAAAACCTCATGAACCATTATTTGGCTCCAGAAATGAACCATTCAATGACATAAGGAACCACTTGGGTGAAGAAACGGCACTTGCATCATCAATGGGTCCCAATAGGGCTTCTTCTTCCTCGGAGAAAGAGCAAGCAGATGAGGAGTCAAATGATAATGGTGATCGGAAACAAGTTCTTTTCATTGATTTTCTTGGTGTTGGGGACCAGTGA 666 0.4474 MADSSQAAEGIANKYRPRVNYWKVAEDEKLRQLVQQHGPHDWNSIAEHLEGRTGKSCRLRWVNHLDPRLNRNPFTEEEDERLLAARELYGNKWSTIAKLFPGRTDNAVKNHWHVVMARKRREETKKRRFQELNNDSNNTSSSTNSVSHHNRAKPHEPLFGSRNEPFNDIRNHLGEETALASSMGPNRASSSSEKEQADEESNDNGDRKQVLFIDFLGVGDQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2213 221 CDD SANT 73 116 IPR001005 -
Ssu6g2213 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 65 IPR017930 -
Ssu6g2213 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Ssu6g2213 221 SMART sant 18 67 IPR001005 -
Ssu6g2213 221 SMART sant 70 118 IPR001005 -
Ssu6g2213 221 PANTHER MYB PROTEIN-RELATED 21 141 - -
Ssu6g2213 221 Gene3D - 72 150 - -
Ssu6g2213 221 MobiDBLite consensus disorder prediction 192 207 - -
Ssu6g2213 221 MobiDBLite consensus disorder prediction 133 148 - -
Ssu6g2213 221 PANTHER OS08G0435700 PROTEIN 21 141 - -
Ssu6g2213 221 MobiDBLite consensus disorder prediction 118 210 - -
Ssu6g2213 221 SUPERFAMILY Homeodomain-like 18 112 IPR009057 -
Ssu6g2213 221 ProSiteProfiles Myb-like domain profile. 22 65 IPR001005 -
Ssu6g2213 221 MobiDBLite consensus disorder prediction 118 132 - -
Ssu6g2213 221 Pfam Myb-like DNA-binding domain 22 82 - -
Ssu6g2213 221 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Ssu6g2213 221 Gene3D - 20 70 - -
Ssu6g2213 221 CDD SANT 22 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2213 Ssu-Chr6 47821539 47823667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2213 21 127 MYB Transcription Factor Family AT1G17950 71.028 7.81e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g2213 Myb_DNA-bind_6 5.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2213 K09422 - gmx:102660725 209.534