Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2212 ATGTCATTGGTTATATCTACTGAGCTGGCTGATACATCACATAGGAATGCCAAGCTCTACACACTAAAGGGAACTGATGTTACAGCTGATTTATCCTCCCACAATTTTGCTGCGGATAAGCACAGAAACGTGTATGTGACAGATTCTTACTCCAGTGAGAGTTATGAAAAGTACTTCCGCGATTCGCCAACAGAAGAACTTATAGAACCATCTAGTTCCAGCATATCAGGAAATTCAGTTCACCCTGATGGTGCTTCTTCTTACCTGCTCAGAGCTAGTTCAGGAGCTTCTGTGGTTGCTAATAACCCATTTGACACTTCTTTGTTGTCTGCAAGGCATCATGATGCCTATCAGTCCAGTTTTAGATCAGATTTCATTGAAAATGGGAGCCCGGATTTCCTTGACTTCGATGGTGAAATGCGATTGAAACTACAAGAATTAGAGAGGGCTTTGCTTTctgataataatgatgatgatgaggaggaggaggaggaggaggaggaggacaTATTTGAGACAGTTCAAAGCATGGAGATTGATCCCGACATGGCCGAGTGGGCCAATCCCCTTCAAGATATGCTGCTCCATGACTCACCGAAGGAGTCCTCATCCTCATATTCTTCCAATCTTACCAGCATAAGCAGCACCAAGGAGACATCACAAAACTCGCCACAAACCACCAAGCAACTGCTTTACGATTGTGCTAGAGCACTTTCAGAAGGAAATGAAGAGGAAGCCACATCTATGATAAACAATCTCCGGCAAATGGTCTCAATCCAGGGTGATCCTTCTCAAAGAATTGCAGCCTACATGGTGGAAGGACTCGCGGCTCGCGTGGCTTCGTCCGGAAAATGCATCTATCAAGCATTGAGATGCAAGGAACCTCCTTCTTCTGATCGCTTGGCAGCTATGCAGATACTGTTTGAGGTCTGCCCGTGTTTCAAATTCGGATTCATTGCTGCAAATGGCGCCATAGCCGAGGCTGTTAGAGATGAAAAGAAGGTTCACATAATAGACTTTGACATCAACCAAGGAACTCAATACATAACTCTAATACAAACACTTGCTTCAATGCCAGGTAGGCCACCTCATGTGAGGTTAACCGGGGTCGACGATCCCGAGTCTGTGCAGCGTTCCATCGGTGGCCTAAACATCATAGGACAAAGACTTGAAAAGCTGGCTGAGGAACTTGGATTGCCGTTTGAGTTTCGAGCAGTGGCGTCAAGGACCTCACTTGTCACTCCATCAATGCTCAGCTGTCGTCCCGGGGAAGCGCTTGTGGTGAACTTTGCATTCCAGCTTCACCACATGCACGATGAGAGTGTGTCGACGGTGAACGAGAGAGACCAACTTCTTCGCATGGTTAAGAGCCTGAATCCAAAACTTGTCACAGTCGTGGAGCAGGACATGAACACCAACACCTCTCCTTTTCTCCAGAGGTTTGCTGAGGCCTACAATTACTACTCTGCCGTGTTTGACACGCTTGATGCAACTCTCCCTAGGGAGAGCCAGGACAGGATGAACGTTGAAAGGCAATGCTTGGCAAAGGACATTGTCAACATTGTTGCTTGCGAGGGCGAGGACAGGATAGAACGGTATGAAGTTGCCGGAAAATGGCGGGCGCGGCTGACGATGGCTGGCTTCGCTTCATCCCCAATGAGCACAAATGTGAGAGAAGCAATCAGGAAACTCATTAAGCAGTACTGTGACAGGTTCAAGATAAGGGAGGAAATGGGGGCACTGCATTTTGGGTGGGAGGATAAAAACTTAATTGTTGCTTCAGCATGGAAGTGA 1794 0.4565 MSLVISTELADTSHRNAKLYTLKGTDVTADLSSHNFAADKHRNVYVTDSYSSESYEKYFRDSPTEELIEPSSSSISGNSVHPDGASSYLLRASSGASVVANNPFDTSLLSARHHDAYQSSFRSDFIENGSPDFLDFDGEMRLKLQELERALLSDNNDDDEEEEEEEEEDIFETVQSMEIDPDMAEWANPLQDMLLHDSPKESSSSYSSNLTSISSTKETSQNSPQTTKQLLYDCARALSEGNEEEATSMINNLRQMVSIQGDPSQRIAAYMVEGLAARVASSGKCIYQALRCKEPPSSDRLAAMQILFEVCPCFKFGFIAANGAIAEAVRDEKKVHIIDFDINQGTQYITLIQTLASMPGRPPHVRLTGVDDPESVQRSIGGLNIIGQRLEKLAEELGLPFEFRAVASRTSLVTPSMLSCRPGEALVVNFAFQLHHMHDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLQRFAEAYNYYSAVFDTLDATLPRESQDRMNVERQCLAKDIVNIVACEGEDRIERYEVAGKWRARLTMAGFASSPMSTNVREAIRKLIKQYCDRFKIREEMGALHFGWEDKNLIVASAWK 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2212 597 MobiDBLite consensus disorder prediction 195 226 - -
Ssu6g2212 597 Pfam GRAS domain family 228 597 IPR005202 -
Ssu6g2212 597 MobiDBLite consensus disorder prediction 151 171 - -
Ssu6g2212 597 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 596 IPR005202 -
Ssu6g2212 597 MobiDBLite consensus disorder prediction 153 171 - -
Ssu6g2212 597 Coils Coil 142 169 - -
Ssu6g2212 597 MobiDBLite consensus disorder prediction 197 226 - -
Ssu6g2212 597 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 10 596 IPR030011 GO:0003700|GO:0005634
Ssu6g2212 597 ProSiteProfiles GRAS family profile. 218 597 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2212 Ssu-Chr6 47711306 47713099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2212 1 597 GRAS Transcription Factor Family AT1G21450 60.396 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g2212 GRAS 5.2e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2212 - - gmx:100807048 1026.16