Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2210 atgTCTAGGACGCTGGTGCAGCCGATAGGGCAGAAGAGACTAACAAACGTGGCAGTGGTGCGTCTAAAGAAGCATGGCATGCGCTTTGAGATCGCCTGCTACCCTAACACCGTCCTCTCTTGGCGTTCTGGCGTGGAAAAGGACTTGGATGAAGTGCTGCAGTCCCAGACTGTTTATTCCAATGTTTCCAAAGGGGTTCTTGCCAAGTCCAAGGATTTAATTGCAGCTTTTGGCACCGATGACCACTCCAAGATATGCTTAGAGATTTTAAAGAAAGGAGAACTTCAGGTAGCTGGCAAAGAGAGGGAATCAATATTGTCAAGTCAGTTCAGGGATGTTGCGACCATAGTGATGCACAAGACTTATAATCCCGAGACTCAGCGCCCTTACACTATTAGTATGATTGAACGCCTCATGCGGGAAATCCATTTCGCTGTTGATCCACACGGCACCTCCAAGAAGCAGgCTCTGGAGTTAATTCAAGAGCTTCAAAAGCACTTCCCGATAAAACGGTGTCCATTGAGAATACGAGCTACTGCTCGTGAGGACCAAGTTCCTGAACTTTTAGAAAAGCTGAATGCATGGAATGCCACTGTTATTTCTAAAGAAGGATCTTCTGCTCAGTTATCTGTTATTTTTGAATTGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTCTATGTGGAGGGGGATACCCATGTGGAGCAATACAATGATTATGAGGATACACCTGCACTGTTGCCCAAAGAAACTCATGATTCTGTGCTTGAACTGAATGAGAAACTTCAAAAGCAAATGATTTCATCTACGAGTAGGCCTACTGAGGAACCACAAAAGCAAAACAAGTGCAACACGTGTAGTGTTTCTTTTGATGACTCCAAGATGTACAGGGAACATCACAAGAGCGAGTGGCACAAGCACAATATGAAGCGTAAGACAAGGCAACTCCACCACTTACTGAGGAAGAGTGCATGGCAGACATGGAATTGGGTGACTCAAAATCTGATTTGA 1059 0.4419 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSQTVYSNVSKGVLAKSKDLIAAFGTDDHSKICLEILKKGELQVAGKERESILSSQFRDVATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHGTSKKQALELIQELQKHFPIKRCPLRIRATAREDQVPELLEKLNAWNATVISKEGSSAQLSVIFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVEGDTHVEQYNDYEDTPALLPKETHDSVLELNEKLQKQMISSTSRPTEEPQKQNKCNTCSVSFDDSKMYREHHKSEWHKHNMKRKTRQLHHLLRKSAWQTWNWVTQNLI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2210 352 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Ssu6g2210 352 Gene3D - 100 172 IPR037188 -
Ssu6g2210 352 Pfam SBDS protein, C-terminal domain 176 238 IPR046928 -
Ssu6g2210 352 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 232 IPR002140 GO:0042256
Ssu6g2210 352 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Ssu6g2210 352 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Ssu6g2210 352 PANTHER BNAANNG06530D PROTEIN 1 335 - -
Ssu6g2210 352 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Ssu6g2210 352 Gene3D - 174 251 - -
Ssu6g2210 352 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Ssu6g2210 352 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Ssu6g2210 352 SUPERFAMILY beta-beta-alpha zinc fingers 289 337 IPR036236 -
Ssu6g2210 352 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 335 IPR039100 -
Ssu6g2210 352 Gene3D - 1 96 IPR036786 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2210 27 332 C2H2 Transcription Factor Family AT1G43860 58.307 2.23e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g2210 SBDS_C 4.4e-26 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2210 K14574 - gmx:100797497 622.854