Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2209 ATGCCGTCTTGGTGGACAAGAAGGTGTCAAATAATTGCACAAGATAactataaacaacaacaaaagagcAGGAACAACGAAAGGGAAAAAAGCAATGTATCAAAAACCAGGATTGCATCTAATAAGAGGAAGCAAAACATAGAGAAGGAAAAAAGCTTCGAAGAAACTGTCCTAGTCTCTCACCAATTTTCTAGAGCTTCTTCCATTCCTAAGAGACCCTCTTTTTATGAAATCTTCCATTCAGAGAAGCAAGTATATCCTCTACCTCAACCATCAAGGTCACTGGAACTTGCATCAGTGAAGTTTGCTTCAGAACCAGCATCAAGCTCAAGCTCTTCTTCATCAGAGTCTTCTACTTCAGCCTCTTCGGGTGCAGATGTCAGTGGAGATCATAGAGATTTTGGTTTTTTCATGTTGGTCTTGTACTCTtgttcacattatttatttattttttgtggggTTATTGTAGATTCTTACCTTGTCTTTTCTCATCTGCAACCAAAGTGGATCAAGGGAAGGCTTCTTGGAAGAGGGTCATTTGGTCAAGTCTATGCTGGATTCAAtagTACAAATGGACAGCTATGCGCAATTAAGGAAATGAGATCTATCTGTGAGGATCAGAACTCTGAAGCTTATCTCAAAGAGATAAATCAGGAGGTAGCAGTACTAAGTCAGCTTTCCCATCGCAACATTGTCCAATATTATGGAAGCGAACTGGGGAAAGGGAAGCTGTCCCTATATTTAGAGTATGTCTCCGGTGGATCAATTCACAAATTGCTTCAGGAATATGGCCCATTCAAGGAATCTCTTATTAGAAGTTACACCAGGCAGATTCTTCATGCGATAGCTTACTTACATGCAAGAAATGTTGTGCACAGGGATATCAAGGGCACAAACATACTAGTAGATCCTAATGGTATAATCAAGCTTGCTGATTTTGGCATGGCTAAACATATAACAACAAGTTCTACTGCTCTTTCTTTCAAAGGAAGCCCTCATTGGATGGCACCTGAGGTGATTCTGAATACAAGTTGTGTTGGCCTTGCTGTTGATATATGGAGCTTGGGGTGTACAATTATTGAAATGGCAACATCAAAGCCACCGTGGAGCAAGTATAAAGGGGTTACtgcaatatttaaaattgcaaacaGCAATGATTACCCTCAAATTCCTTCTCAGCTTTCAGAGGATgcccaaatttttttgaaactttGCTTACAGAGAGACCCTCTTTTACGTCCTTCGGCTGCCCAACTGCTGCATCACCCTTTTATCCAAGAAgatagttga 1290 0.3783 MPSWWTRRCQIIAQDNYKQQQKSRNNEREKSNVSKTRIASNKRKQNIEKEKSFEETVLVSHQFSRASSIPKRPSFYEIFHSEKQVYPLPQPSRSLELASVKFASEPASSSSSSSSESSTSASSGADVSGDHRDFGFFMLVLYSCSHYLFIFCGVIVDSYLVFSHLQPKWIKGRLLGRGSFGQVYAGFNSTNGQLCAIKEMRSICEDQNSEAYLKEINQEVAVLSQLSHRNIVQYYGSELGKGKLSLYLEYVSGGSIHKLLQEYGPFKESLIRSYTRQILHAIAYLHARNVVHRDIKGTNILVDPNGIIKLADFGMAKHITTSSTALSFKGSPHWMAPEVILNTSCVGLAVDIWSLGCTIIEMATSKPPWSKYKGVTAIFKIANSNDYPQIPSQLSEDAQIFLKLCLQRDPLLRPSAAQLLHHPFIQEDS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2209 429 ProSiteProfiles Protein kinase domain profile. 169 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2209 429 Pfam Protein kinase domain 171 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2209 429 SMART serkin_6 169 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2209 429 ProSitePatterns Protein kinases ATP-binding region signature. 175 198 IPR017441 GO:0005524
Ssu6g2209 429 MobiDBLite consensus disorder prediction 16 46 - -
Ssu6g2209 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Ssu6g2209 429 MobiDBLite consensus disorder prediction 106 126 - -
Ssu6g2209 429 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 165 427 - -
Ssu6g2209 429 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 165 427 - -
Ssu6g2209 429 SUPERFAMILY Protein kinase-like (PK-like) 150 427 IPR011009 -
Ssu6g2209 429 Gene3D Transferase(Phosphotransferase) domain 1 168 429 - -
Ssu6g2209 429 MobiDBLite consensus disorder prediction 21 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2209 Ssu-Chr6 47622581 47625724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2209 169 426 MAP Kinase Kinase Kinase AT1G53570 67.054 5.15e-130 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu6g2209 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2209 K04421 - cpap:110818034 401.364