Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2207 ATGGTGCCTCCGGGGCCACCCACGCCGATTGGTGGTGCCCGGTCTGTGTCGCCGTCCCTTTTGAGATCGAATTCGGGAATGTTGGGGGGTCAAGGGGGCCCCATGCCTTCACAAACTTCGTTCTCTTCGCTGGTTGCGCAGCGAACCCAGTTTAACAGCATGAACATGCTAGGGAATATGCCTAATGTAACTTCCTTGCTGAATCAGTCTTTCCCAAATGGAATTCCAAATTCCGGGATGGCTGGCCCTGGGAGTGGCCAGCGTGGTGGAGGCATTGATGCTGGGGCGGAATCTGATCCGTTATCTACCGTTGGCAATGGAATGAATTTTGGCAGTCCTTTGCAATCGAATTTGGTGAACCCTGGTTCATCAGGTCAAGGTCAGGGTCAACAATTTTCACATGCTTCTGGTAGCCAGATGTTGCCAGATCAGCAGCATTCCCAGCAACTTGAACCTCAGAATTTCCAACAACATAGTCAGCCGTCAATGCAACAGTTCTCTGCTCCTCTCAATGCTCAGCAGCAACAGCAGCATTTTCAGTCGATTCGAGGTGGGATGGGTGGTGTTGGACCGGTGAAGTTGGAGCCGCAGGCAAACAACGATCAGTTTGGGCAGCAGTTACCAAGGAATCTTGCTCAGGTGAAATTGGAACCGCAACAACTTCAAACAATGAGAAATATGGCTCCGGTAAAAATGGAGCCCCAGCATACTGATCAGCAGTTTTTGCATCCGCAACAACAGCAACAGCAGCAGCAACAGCAACAGCAACAGCAACAACTGCTCCACATGTCAAGGCAATCCTCTCAGGCTGCTGCGGCTCAGATGAATCATCTTTTGCAGCAGCAGAGACTTTTGCAATTTCAACAAcatcagcagcagcagcaacTCTTGAAGACAATGCCTCAACAACGGCCCCAGCTACCACAGCAGTTTCAGCAGCAGAATATGCCTATGAGGTCTCCTGTAAAACCAGCATATGAACCTGGGATGTGTGCTAGGCGGCTGATACATTACATGTATCAGCAACAACATAGACCtgaaGATAACAACATTGATTTCTGGAGGAAATTTGTTGCTGAGTATTTTGCTCCAAATGCCAAAAAGAAGTGGTGTGTGTCCATGTATGGAAGTGGCAGACAAACTACTGGAGTTTTCCCTCAGgATGTATGGCACTGCGAAATATGTAATCGCAAACCTGGCCGTGGGTTTGAAGCAACTGCTGAGGTTCTTCCCAggcttttcaaaataaagtatgaAAGTGGTACTTTGGAAGAGCTACTTTATGTTGACATGCCTCGTGAATATCATAATTCCTCTGGCCAGATTGTTCTAGATTATGCAAAAGCAATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTTCGAATAGTTTTTTCTCCAGACCTAAAGATTTGCTCTTGGGAATTTTGTGCTCGGCGCCATGAAGAGCTCATCCCCAGAAGATTGTTAATACCTCAGGTTAGTCAACTTGGAGCAGTTGCTCAAAAATACCAGGCATTTACTCAAAATGCGACACCCAATTTATCTGTTCCAGAGTTACAAAATAATTGCAATATGTTTGTTGCATCGGCCCGTCAGTTGGCAAAAGCTTTAGAAGTTCCTTTGGTCAATGATTTAGGATATACAAAGAGATATGTGCGGTGCCTTCAGATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTATAGCAGAGAAACACAGACTGGACCCATGGACAGCTTAGCTAAATTCCCTCGGAGAACAAGTGGTTCATCTGGACTTCATAGCCAGGCACAACAGTCTGAAGATCAATTACGGCAGCAGTCACAGCCACCCCAGCATATGGTGCCCCATACTTCAAATGGTGATCAAAGCTGTGTGCAAATTGCTTCTAGCAATGGTTTGGTTAGTGTGAATAACTCTGTCAATGCAGCATCTGCATCAACCACCACAAGCACCATTGTTGGACTTCTCCACCAGAATTCTATGAATTCTAGACAAAACACAATGAACAATGCAAGCAGCCCTTATGGAGGAAGTTCTGTTCAGATTCCATCCCCAGGTTCCTCCGGTAATGTGCCACAAGCGCAACCAAATGCATCCCCTTTTCAATCACTAACACCATCCTCATCTAACAACCCACAAACATCTCATCCGGTCTTAACTTCTGCAAATCACATGGGTACAGCAAATTCACCAGCTAATATTTCCTTGCAACAACAGCAGACATCTCTTCCTGCTGAAGCCGACCCTAGTGATGCCCAGAGCTCAGTCCAGAAAATCATTCATGAGATGATGTCCTCCCAGATGAATAGCACAGGTGGAATGGCTGGCACTGGTTTGCTTGGAAATGACATGAAGAATGTAAACGTGATTCTAAGTAACAATACAGGGCTCAACAGTGGCAATGGCCTGGTGGGTAACGGGGCTGTAAACAGTAATTCAGGTGTTGGGGTTGGTGGTTATGGCATAATGGGTCTTGGTCCATCTGGTATGACCAATGGAATGAGACCTGTAGTGGGACATAATTCAATCATGAATGGAAGGGGCGTAATGGCATCTCTTGCTCGGGAACAAGGTATGAATCATCAACAGGATTTCTCAAGCCAACTACTTAGTGGGCTAGGAGCTGTAAATGGCTTTAATAATCTTCAATTTGATTGGAAACCGTCTCCATGA 2700 0.4519 MVPPGPPTPIGGARSVSPSLLRSNSGMLGGQGGPMPSQTSFSSLVAQRTQFNSMNMLGNMPNVTSLLNQSFPNGIPNSGMAGPGSGQRGGGIDAGAESDPLSTVGNGMNFGSPLQSNLVNPGSSGQGQGQQFSHASGSQMLPDQQHSQQLEPQNFQQHSQPSMQQFSAPLNAQQQQQHFQSIRGGMGGVGPVKLEPQANNDQFGQQLPRNLAQVKLEPQQLQTMRNMAPVKMEPQHTDQQFLHPQQQQQQQQQQQQQQQLLHMSRQSSQAAAAQMNHLLQQQRLLQFQQHQQQQQLLKTMPQQRPQLPQQFQQQNMPMRSPVKPAYEPGMCARRLIHYMYQQQHRPEDNNIDFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAVAQKYQAFTQNATPNLSVPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETQTGPMDSLAKFPRRTSGSSGLHSQAQQSEDQLRQQSQPPQHMVPHTSNGDQSCVQIASSNGLVSVNNSVNAASASTTTSTIVGLLHQNSMNSRQNTMNNASSPYGGSSVQIPSPGSSGNVPQAQPNASPFQSLTPSSSNNPQTSHPVLTSANHMGTANSPANISLQQQQTSLPAEADPSDAQSSVQKIIHEMMSSQMNSTGGMAGTGLLGNDMKNVNVILSNNTGLNSGNGLVGNGAVNSNSGVGVGGYGIMGLGPSGMTNGMRPVVGHNSIMNGRGVMASLAREQGMNHQQDFSSQLLSGLGAVNGFNNLQFDWKPSP 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2207 899 MobiDBLite consensus disorder prediction 672 739 - -
Ssu6g2207 899 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 898 - -
Ssu6g2207 899 MobiDBLite consensus disorder prediction 232 273 - -
Ssu6g2207 899 MobiDBLite consensus disorder prediction 68 202 - -
Ssu6g2207 899 MobiDBLite consensus disorder prediction 17 42 - -
Ssu6g2207 899 MobiDBLite consensus disorder prediction 1 42 - -
Ssu6g2207 899 MobiDBLite consensus disorder prediction 238 273 - -
Ssu6g2207 899 Pfam LIM-domain binding protein 334 588 IPR029005 -
Ssu6g2207 899 MobiDBLite consensus disorder prediction 102 182 - -
Ssu6g2207 899 MobiDBLite consensus disorder prediction 592 633 - -
Ssu6g2207 899 PANTHER LIM DOMAIN-BINDING PROTEIN 1 898 IPR029005 -
Ssu6g2207 899 MobiDBLite consensus disorder prediction 581 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2207 Ssu-Chr6 47582096 47594769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2207 1 895 C2H2 Transcription Factor Family AT1G43850 59.130 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2207 - - gmx:100798031 1449.11