Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2206 ATGTGTAAATTGGTGACGTTCTGCTACTTTTTCTCCGTCTTACTCTCCCTCTTAATGGTGGCTATCACTGCCTTTTTGATGATCGTGCATCCCAAAGTGGTTAAGTACAACGTCGCCAATGCTACCCTCATTGAATTCGATTACACCAACAATGCCCTCCACTACAACCTTGCCCTTAAGATCACCATCAGCAACCCCAACAAGTTTGTTGGCATTTACTATGACTGTGTCGAAGCACTTGCGTTGTACCAGGATGTCGAGTTCGACTCCCAGATCTTGGGAACCTTCTTCCAGCCCGACCAGAATACTAGTGTGTTGAGCCCTGTCTTCAAAGGCAAGAAGCCCCTTAGCTCAAACCAGATTTCAAAGTTGAACATAAAGAAGAGCAGTAGTATTTACCACATTGATGTGGAGCTGTACATGAAAGTTAGGTATAAGGTGGGTCTGATCAAAATTCCGAAGAAACTCAAGGTTCATTATGACTTGCTGGTTCCTCTTAAATCCCATAATACAACCAAGCTTGCCAATGGGTTTCAAGCCACCAATGTTATCAGGATTACATAA 564 0.4344 MCKLVTFCYFFSVLLSLLMVAITAFLMIVHPKVVKYNVANATLIEFDYTNNALHYNLALKITISNPNKFVGIYYDCVEALALYQDVEFDSQILGTFFQPDQNTSVLSPVFKGKKPLSSNQISKLNIKKSSSIYHIDVELYMKVRYKVGLIKIPKKLKVHYDLLVPLKSHNTTKLANGFQATNVIRIT 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2206 187 PANTHER OS05G0367900 PROTEIN 2 182 IPR044839 GO:0098542
Ssu6g2206 187 Pfam Late embryogenesis abundant protein 60 159 IPR004864 -
Ssu6g2206 187 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 2 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2206 Ssu-Chr6 47530659 47531222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2206 28 172 SNARE and Associated Proteins AT1G32270 31.126 9.62e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2206 - - aprc:113873272 174.481