Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2203 atgtcTCAATATCCTCAGCAAAAGAATGTTCGGAGAAAGAAAGGCACCCGCTGGACGAAAGAGGAGCACAGTTTTAGCTCATTTGTTCCGTGTTTTCAGGATCAGTATAAAAGGTTATTTCTTCATGGACTGGAGATATTTGGTAAGGGAGATTGGAAAAACATTGCAAAATATGTTGTGACGAGAACTTCTACCCAAGTTGCAAGCCACGCCCAAAAATATTTCCTCCACCACAGTAGTATTAAGCAGAAGAAAAGAGCAAGCATTCATAACATAACTTTAGAGAATGACTTGATCTCACAACAAGCTGACCAACACAAGCCAGAAAATCTAATCCAGCAGTCAAATGAAATACAGAAAGCACAAGAAACGATAGGTTTATAA 384 0.3828 MSQYPQQKNVRRKKGTRWTKEEHSFSSFVPCFQDQYKRLFLHGLEIFGKGDWKNIAKYVVTRTSTQVASHAQKYFLHHSSIKQKKRASIHNITLENDLISQQADQHKPENLIQQSNEIQKAQETIGL 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2203 127 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 79 IPR017930 -
Ssu6g2203 127 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 9 119 IPR043363 -
Ssu6g2203 127 Gene3D - 32 82 - -
Ssu6g2203 127 ProSiteProfiles SANT domain profile. 37 79 IPR017884 -
Ssu6g2203 127 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 9 119 - -
Ssu6g2203 127 Pfam Myb-like DNA-binding domain 39 75 IPR001005 -
Ssu6g2203 127 CDD SANT 17 75 IPR001005 -
Ssu6g2203 127 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 34 77 IPR006447 GO:0003677
Ssu6g2203 127 SUPERFAMILY Homeodomain-like 11 80 IPR009057 -
Ssu6g2203 127 SMART sant 14 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2203 Ssu-Chr6 47317770 47319665 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g2203 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2203 - - twl:120006132 101.293