Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2200 ATGTCTAGCACCGTTGGCCAGACCATCAAGTGCAAAGCTGCGATTTCATGGGAGGCTGGGAAGCCACTGGTGATTGAAGAAATAGAGGTGGCGCCTCCCCAAGCCGGTGAAGTCCGTTTGAAGATCCTCTTCACCTCTCTTTGCCACACTGATGTTTACTTCTGGGATGCCAAGGGCCAGACTCCGTTGTTTCCTCGCATTTTTGGCCATGAAGCGTCAGGGGTTGTGGAGAGCGTAGGCGAGGGTGTGACTCATCTGAAACCAGGAGATCATGCCCTCCCTGTGTTCACAGGAGAGTGTGGGGAATGCTCACATTGTAAGTCAGAAGAGAGCAACATGTGTGAGCTACTCAGGATCAACACCGATAGGGGTGTCATGATCAATGATGCCCAATCAAGGTTCTCTAAGAATGGACAACCCATATACCATTTCTTGGGAACCTCTACATTCAGTGAATACACTGTTGTCCATGCTGGATGTGTTGCAAAGATCAACCCTGCTGCTCCCCTTGACAAAGTTTGTGTTCTCAGTTGTGGAATTTGCACAGGTTTTGGTGCTACTGTAAATGTAGCAAAACCAAAACCTGGTTCCTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCGGCTGCCGAAGGGGCAAGGATTTCAGGTGCTTCAAGAATCATTGGAGTTGATTTAGTTTCAGCCCGATTGAAGAAGAAGTTTGGGGTTAATGAGTTTGTGAACCCAAAGGATCATGATAAACCTGTGCAACAGGTAATTGCTGAAATGACCAATGGGGGTGTGGATCGGGCTGTTGAATGTACTGGCAGCATCCAGGCCATGATCTCAGCATTTGAATGTGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGTGTGCCTAGTAAAGATGATGCATTCAAAACTGCTCCTGTTAATTTCCTGAACGAGAGGACTCTTAAGGGTACCTTTTATGGTAACTACAAACCACGCACTGATCTTCCATCTGTTGTGGAAAAGTACATGAAGGGGGAGCTAGAAGTGGATAAATTCATCACTCACACAGTTCCATTCTCAGAGATCAACAAAGCATTTGATTACATGCTGAAAGGACAGTCCATTAGGTGTATCATCCGCATGCAAGAGTAA 1137 0.4688 MSSTVGQTIKCKAAISWEAGKPLVIEEIEVAPPQAGEVRLKILFTSLCHTDVYFWDAKGQTPLFPRIFGHEASGVVESVGEGVTHLKPGDHALPVFTGECGECSHCKSEESNMCELLRINTDRGVMINDAQSRFSKNGQPIYHFLGTSTFSEYTVVHAGCVAKINPAAPLDKVCVLSCGICTGFGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSARLKKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTAPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMKGELEVDKFITHTVPFSEINKAFDYMLKGQSIRCIIRMQE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2200 378 Pfam Zinc-binding dehydrogenase 206 328 IPR013149 -
Ssu6g2200 378 CDD alcohol_DH_plants 9 375 - -
Ssu6g2200 378 PANTHER ALCOHOL DEHYDROGENASE 4 376 - -
Ssu6g2200 378 SMART PKS_ER_names_mod 20 374 IPR020843 GO:0016491
Ssu6g2200 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
Ssu6g2200 378 Gene3D - 183 319 - -
Ssu6g2200 378 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Ssu6g2200 378 SUPERFAMILY GroES-like 327 375 IPR011032 -
Ssu6g2200 378 SUPERFAMILY GroES-like 4 186 IPR011032 -
Ssu6g2200 378 Gene3D - 19 368 - -
Ssu6g2200 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Ssu6g2200 378 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2200 Ssu-Chr6 47239434 47242035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2200 1 366 Monolignol Biosynthesis Gene Families AT1G72680 25.397 6.82e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2200 K18857 - gmx:100800668 722.235