Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2197 ATGGACAAAGGGTGGCTTTCAAGTGAGGGTGTCGGAGTTTTTGGTGTGATGGGTAGGTGTTGGTTAGTTGGGGTCATAATTGTGGTGGGGTGTGCCAGCTTGCTGGATACTGTTAGAGTAGAAGGGTATCCAGCCGAGGATGTGGTGGTGAGATTGCCTGGCCAACCTAAGGTTGGGTTTAAGCAGTTTGCTGGGTATGTTGATGTAGATGTCAAGCATGGAAGAAGCCTCTTCTACTACTTTGTGGAGGCTGAGCAAGACCCTGACAGGAAGCCCCTCACACTTTGGCTCAATGGAGGTCCTGGATGTTCCTCCATTGGAGGAGGTGCTTTTACTGAATTGGGACCCTTTTATCCTAAAGGTGATGGACGTGGTCTCCGAAGAAATTCGATGTCTTGGAATAAAGCATCCAACCTCCTTTTTGTGGAGTCTCCCGCTGGAGTTGGTTGGTCATACTCCAATACAACTTCAGATTATAATTCTGGAGATGCCTCCACGGCCAGTGATATGTATTTGTTCATGCTGAAATGGTACGAGAAATTTCCATCATACAGAACAAGGGAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACACTATATACCACAATTAACTAGTGCTCTATTGGACCATAATGCTCGTTCAACTGGTTTCAGATTCAATATTAAAGGAGTTGCTattGGAAACCCACTTTTGAGACTTGATCGGGATGCACCTGCAACTTATGAATACTTCTGGTCACATGGAATGATTTCTGATGAAATTGGCCTCGCCATTATGAATGATTGTGATTTTGATGATTATGTCTATGCAAGTCCTCACAACGTTTCCCATTCGTGCAACAATGCCATATATGAAGCAAATCTCATTGTTGGCGACTATATAAACAGCTATGATGTAATTCTAGATGTTTGTTATCCATCAATAGTGGAACAAGAACTGAGATTGAAAAAGATGGCAACTAAAATAAGTGTAGGTGTAGATGTCTGTATGACTCTAGAAAGACGTTTTTACTTAAATCTCCCTGAGGTCCAGAAGGCTCTCCATGCAAACCGTACAAATCTTCCTTATAACTGGTCCATGTGTAGTCGTATTGTAAACTACAGCGACACTGATGGTAACATTAGCATTCTCCCAATTCTCAAAAGGATAATCCAAAACCGTATCCCAGTATGGGTGTTCAGCGGAGACCAAGATTCTGTTGTGCCATTATTGGGATCTCGAACACTCATTCGTGAACTAGCTCACGAATTGCAATTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGACAGGTTGGAGGTTGGGTAACTGAGTATGGAAATTTGTTGACCTTTGCCACTGTAAGGGGAGCTGCTCACATGGTACCTTATGCACAACCTTCAAGAGCACTGCATCTATTCAGTTCATTTGTGCGCGCTAGAAGGTTGCCCAACACAACACGTCCTTCAATTGATGAATAA 1470 0.4333 MDKGWLSSEGVGVFGVMGRCWLVGVIIVVGCASLLDTVRVEGYPAEDVVVRLPGQPKVGFKQFAGYVDVDVKHGRSLFYYFVEAEQDPDRKPLTLWLNGGPGCSSIGGGAFTELGPFYPKGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNSGDASTASDMYLFMLKWYEKFPSYRTRELFLTGESYAGHYIPQLTSALLDHNARSTGFRFNIKGVAIGNPLLRLDRDAPATYEYFWSHGMISDEIGLAIMNDCDFDDYVYASPHNVSHSCNNAIYEANLIVGDYINSYDVILDVCYPSIVEQELRLKKMATKISVGVDVCMTLERRFYLNLPEVQKALHANRTNLPYNWSMCSRIVNYSDTDGNISILPILKRIIQNRIPVWVFSGDQDSVVPLLGSRTLIRELAHELQFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVRARRLPNTTRPSIDE 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2197 489 Pfam Serine carboxypeptidase 54 475 IPR001563 GO:0004185|GO:0006508
Ssu6g2197 489 ProSitePatterns Serine carboxypeptidases, serine active site. 191 198 IPR018202 GO:0004185
Ssu6g2197 489 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Ssu6g2197 489 Gene3D alpha/beta hydrolase 44 306 IPR029058 -
Ssu6g2197 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 21 483 IPR001563 GO:0004185|GO:0006508
Ssu6g2197 489 PANTHER CARBOXYPEPTIDASE 21 483 - -
Ssu6g2197 489 SUPERFAMILY alpha/beta-Hydrolases 46 478 IPR029058 -
Ssu6g2197 489 Gene3D - 377 476 - -
Ssu6g2197 489 Gene3D - 330 366 - -
Ssu6g2197 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 142 152 IPR001563 GO:0004185|GO:0006508
Ssu6g2197 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 446 459 IPR001563 GO:0004185|GO:0006508
Ssu6g2197 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 177 202 IPR001563 GO:0004185|GO:0006508
Ssu6g2197 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 141 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2197 Ssu-Chr6 46965011 46976284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2197 336 479 Calmodulin-binding Proteins AT2G22960 25.694 1.15e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2197 K16297 - gmx:100801752 930.628