Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2194 ATGGAGCATGGAAGCCGCTCCGTTCACGATGATCATCAGGCAAAATCAAGCTCCGATTCAAACCCTTTGCAGGCAGAGAATCGTTCCACAAACAATGTTGGTGCGGATGACGCACCTCGCAACGTGGCTGTGCAGGAAGATGACCGGTCCATGCCCATTCCGAACTTGTTGAAGATCATGCGGAAGGTGCTTCCACCACAGGCAAAAGTCGCTGAAGAGGCCAAGCAAACAATGCAAGTGTGCGTGTCGGAGTTCATAAGCTTCGTCACCAGCGAGGCCAACGAGCGGTGCCATAAGGAGCATCGCAGGATCGTTACGGCAGAAGACATACTGTGCGCCATGGACACGCTGGGCTTCGACGACTATGTTGGGCCTCTCGCTGCTTTCCTGAAACGCTATCGTCGAAGTGAGGTTGAAAAGTTGGGACACCTTGGGGGGCTTGGCCATGTTCCTATGCGGCAAGTCGTGGCGGGTTATCGTGTGCCATCACCACTGCCACCGTTACCGCCACAACGTCCGGTTGCTCGTTATGGGCCCAATTTCCCTGCAGGCCCAAGTTGCTATCAGGGAATGTTTGAATCGAGTGCCATGTGTGGGTCTTACGATGATGGGTCGGGTGGTAGCGGCAATGTGGTGTTTAATTTTGATCCTCTTAATATTCACAAACGGACGTGA 675 0.5348 MEHGSRSVHDDHQAKSSSDSNPLQAENRSTNNVGADDAPRNVAVQEDDRSMPIPNLLKIMRKVLPPQAKVAEEAKQTMQVCVSEFISFVTSEANERCHKEHRRIVTAEDILCAMDTLGFDDYVGPLAAFLKRYRRSEVEKLGHLGGLGHVPMRQVVAGYRVPSPLPPLPPQRPVARYGPNFPAGPSCYQGMFESSAMCGSYDDGSGGSGNVVFNFDPLNIHKRT 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2194 224 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 17 150 - -
Ssu6g2194 224 SUPERFAMILY Histone-fold 47 150 IPR009072 GO:0046982
Ssu6g2194 224 MobiDBLite consensus disorder prediction 17 36 - -
Ssu6g2194 224 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu6g2194 224 MobiDBLite consensus disorder prediction 1 16 - -
Ssu6g2194 224 Gene3D Histone, subunit A 40 143 IPR009072 GO:0046982
Ssu6g2194 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 150 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu6g2194 224 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Ssu6g2194 224 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Ssu6g2194 224 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Ssu6g2194 224 MobiDBLite consensus disorder prediction 1 49 - -
Ssu6g2194 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2194 Ssu-Chr6 46839117 46842581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2194 33 207 CCAAT-HAP3 Transcription Factor Family AT1G21970 42.632 2.87e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu6g2194 CBFD_NFYB_HMF 3.7e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2194 K08065 - tcc:18593281 155.606