Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2189 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAATATCTCTTTGTTTCCAGCCACCTCTGATCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTCTCAACATTCGATTCCTCTAATTCTGCTACTGCTTTTTCATCATGGGATCCAGCCCTCCAAAGTCCATGCAGATGGGATTACATAAAATGTTCCAAAGAAGGGTTTGTTTCAGAGATCATAATAGCATCCATTGATCTTCACACCACCTTCCCTACACAGCTCCTTTCTTTTGGCCACCTTACCACTCTAGTCATCTCAAATGCAAATCTCACTGGTGAGATTCCTAGTTCAGTGGGAAACTTGTCATCACTAGTTACTTTGGACCTCAGCTTCAATGCTTTATCAGGAACCATTCCATCTGAAATAGGGAAGTTGTACAAACTGCAGTGgctatatttgaattcaaattccTTAAAAGGTGGAATTCCATCCCAAATTGGAAACTGTTCAAAGCTTAGGCAGCTGGAACTGTTTGATAACCAGCTCTCTGGCTTGATTCCAGGAGAAATAGGCCAGTTGAGGGATCTTGAAATGCTTCGAGCCGGCGGGAACCCAGGTATTCATGGTGAAATTCCAGTACAGATATCAAACTGCAAGGCTCTAGTTTATCTAGGCCTTGCAGATACTGGGATATCAGGGGAGATTCCACCAACTATAGGAGAACTTACGAGTCTCAAGACCCTTCAAATCTACACTGCACATCTCACAGGTCACATCCCACCAGAGATTCAAAACTGCTCGGCCTTGGAGGAGTTGTTTCTCTATGAAAACCAGCTTTCTGGAAATATTCCTTCTGAATTGGGTTCCATGAAAAGCCTCAGAAAAGTACTGCTGTGGCAGAATAATTTCAGCGGAACAATTCCAGAAAGTCTGGGAAACAGTACAAGCCTGAGAGTTATAGATTTTTCTATGAATTCTTTGGTTGGTGAACTCCCTGTGACTCTCTGTAGTCTAATCTTATTGGAGGAGcttcttttgtctaataataaCATTTCTGGAGAGATACCTTCCTATATTGGCAACTTCTCCAGTCTGAAGCAACTGGAATTGGATAATAACAGATTCTCTGGGGAGATTCCACCTGACTTGGGGCAACTGAAGGAACTCACCTTGTTCTATGCCTGGCAGAATCAGCTCCATGGAAGCATACCAACAGAACTCTCCAACTGTGAGAAACTTCAAGCACTTGATCTTTCACATAATTTCCTCACTGGATCCATTCCAAGTTCACTATTTCATCTAGAGAATTTAACtcagttgttgttgttatcaaaTAGACTTTCAGGTCAAATTCCTCCAGATATTGGCAGTTGCACCAGCTTGATCAGGCTAAGGTTGGGATCAAACAACTTCACTGGTCAAATTCCACCAGAAATAGGCTTTTTAAGCAGTTTGAGCTTTCTTGAATTGTCAGATAATCTACTCACTGGAGATATACCCTTTGAGATAGGTAACTGTGCTAAGCTAGAGATGCTCGACTTTCACAGCAATGAGTTGCAAGGAGCAATTCCCCCCTCATTAGAACTCTTAGTTGGTCTTAATGTCTTGGATCTTTCTGCAAACAGAATAACTGGCAGCATTCCTGAAAATTTAGGCAAGCTAGCATCTCTAAATAAGTTGATACTCAGTGGAAATCATATCACTGGTTTGATCCCTCAATCACTGGGCTTTTGTAAGGCTTTGCAGTTGCTTGACATAAGCAACAATAGGATCACTGGTTCCATTCCTAGTGAGATAGGTAACTTGCAAGAACTAGATATCCTCTTGAACTTGAGTTGGAATTCTTTAACAGGCCCAATCCCAGAGACCTTCTCAAATCTCTCAAAACTTTCCAACTTGGACCTCTCTCACAACAAGCTCACAGGGAGTCTCAGAGTACTGGGTAGTCTTGACAATCTAGTCTCTCTTAACGTCTCCTACAACAGTTTTTCTGGCTCTCTTCCTGATACAAAGTTCTTCAGGGATCTCCCTCCTGCTGCATTTGCTGGCAACCCTGACCTATGTATTACCAAGTGTCAAGAAAGTGGACATCACCAAGGCATCAAGTCAATAAGAAACATTATCATATACACTTTCCTTGGTGTTATTTTCACTTCAGGGTTTGTTACTTTTGGCGTAATCTTAGCCCTCAAAATTCAAGGGGGCACTAATTTTGACAGTGAAATGCAATGGGCTTTCACTCCATTTCAAAAGCTCAATTTCTCCATCAATGACATTCTCCCAAAGCTATCAGATTCAAACATCGTGGGAAAGGGTTGCTCGGGAGTCGTTTACCGTGTGGAGACTCCATTGAACCAGGTTGTTGCAGTGAAGAAGCTGTGGCCACCAAAGCATGATGAGCCACCAGAGAGAGACCTTTTTGCTGCAGAAGTTCATTCCCTTGGATCAATAAGGCATAAAAATATAGTAAGACTTTTAGGATGCTACAACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATATGCAATGGGAGTTTGTCTGGATTGCTCCATGAAAATAGTTTGTTCTTGGACTGGGATGCAAGATATAAGATCATTCTGGGAGCAGCTCATGGTTTAGAATATATTCATCATCATTGTATCCCTCCAATCATCCATAGAGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTTGTTGGTTCCTCGGATTATTCCGGAGCCTCTGCTATAGTTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACTGAGAAAAGTGATGTGTACAGCTTTGGTGTAGTCCTCATTGAGGTCTTAACAGGGATGGAACCAATTGATAGCAGGATTCCAGAAGGTTCCCACATTGTCCCTTGGGTTATCAGGGAAAtcagagagaagaaaagagagttTACATCAATTCTGGACCAGAAACTAGCACTGCAGTGTGGATCACAAATCCCTGAGATGCTTCAAGTGCTAGGGGTGGCTATCCTTTGTGTGAATCCATCCCCGGAAGAACGACCTACAATGAAAGATGTAACAGCAATGCTCAAGGAGATCAGACATGAAAATgtggattttgattttgagaagTCAAATCTTCTACATAAAGGAGTTGTCACCAATCCAAAAGCAGCAGTTCACTGTCCAAGCTTCTCCAGATCCTGTAAACCTCTAACTGAATCACCATCTTCTTCAGTATCACCAAATTAA 3261 0.4069 MSSNALTLFILFLNISLFPATSDLNQEGLSLLSWLSTFDSSNSATAFSSWDPALQSPCRWDYIKCSKEGFVSEIIIASIDLHTTFPTQLLSFGHLTTLVISNANLTGEIPSSVGNLSSLVTLDLSFNALSGTIPSEIGKLYKLQWLYLNSNSLKGGIPSQIGNCSKLRQLELFDNQLSGLIPGEIGQLRDLEMLRAGGNPGIHGEIPVQISNCKALVYLGLADTGISGEIPPTIGELTSLKTLQIYTAHLTGHIPPEIQNCSALEELFLYENQLSGNIPSELGSMKSLRKVLLWQNNFSGTIPESLGNSTSLRVIDFSMNSLVGELPVTLCSLILLEELLLSNNNISGEIPSYIGNFSSLKQLELDNNRFSGEIPPDLGQLKELTLFYAWQNQLHGSIPTELSNCEKLQALDLSHNFLTGSIPSSLFHLENLTQLLLLSNRLSGQIPPDIGSCTSLIRLRLGSNNFTGQIPPEIGFLSSLSFLELSDNLLTGDIPFEIGNCAKLEMLDFHSNELQGAIPPSLELLVGLNVLDLSANRITGSIPENLGKLASLNKLILSGNHITGLIPQSLGFCKALQLLDISNNRITGSIPSEIGNLQELDILLNLSWNSLTGPIPETFSNLSKLSNLDLSHNKLTGSLRVLGSLDNLVSLNVSYNSFSGSLPDTKFFRDLPPAAFAGNPDLCITKCQESGHHQGIKSIRNIIIYTFLGVIFTSGFVTFGVILALKIQGGTNFDSEMQWAFTPFQKLNFSINDILPKLSDSNIVGKGCSGVVYRVETPLNQVVAVKKLWPPKHDEPPERDLFAAEVHSLGSIRHKNIVRLLGCYNNGRTRLLLFDYICNGSLSGLLHENSLFLDWDARYKIILGAAHGLEYIHHHCIPPIIHRDIKANNILVGPQFEAFLADFGLAKLVGSSDYSGASAIVAGSYGYIAPEYGYSLRITEKSDVYSFGVVLIEVLTGMEPIDSRIPEGSHIVPWVIREIREKKREFTSILDQKLALQCGSQIPEMLQVLGVAILCVNPSPEERPTMKDVTAMLKEIRHENVDFDFEKSNLLHKGVVTNPKAAVHCPSFSRSCKPLTESPSSSVSPN 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2189 1086 SMART LRR_typ_2 333 356 IPR003591 -
Ssu6g2189 1086 SMART LRR_typ_2 357 381 IPR003591 -
Ssu6g2189 1086 SMART LRR_typ_2 140 164 IPR003591 -
Ssu6g2189 1086 SMART LRR_typ_2 477 501 IPR003591 -
Ssu6g2189 1086 SMART LRR_typ_2 285 309 IPR003591 -
Ssu6g2189 1086 SMART LRR_typ_2 622 644 IPR003591 -
Ssu6g2189 1086 SMART LRR_typ_2 645 678 IPR003591 -
Ssu6g2189 1086 SMART LRR_typ_2 429 453 IPR003591 -
Ssu6g2189 1086 SMART LRR_typ_2 549 572 IPR003591 -
Ssu6g2189 1086 SMART LRR_typ_2 116 139 IPR003591 -
Ssu6g2189 1086 SMART LRR_typ_2 525 548 IPR003591 -
Ssu6g2189 1086 ProSiteProfiles Protein kinase domain profile. 758 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2189 1086 Gene3D Ribonuclease Inhibitor 22 199 IPR032675 -
Ssu6g2189 1086 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Ssu6g2189 1086 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Ssu6g2189 1086 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Ssu6g2189 1086 SMART LRR_sd22_2 622 647 - -
Ssu6g2189 1086 SMART LRR_sd22_2 116 139 - -
Ssu6g2189 1086 SMART LRR_sd22_2 573 599 - -
Ssu6g2189 1086 SMART LRR_sd22_2 405 434 - -
Ssu6g2189 1086 SMART LRR_sd22_2 525 548 - -
Ssu6g2189 1086 Gene3D Ribonuclease Inhibitor 200 332 IPR032675 -
Ssu6g2189 1086 Gene3D Ribonuclease Inhibitor 333 602 IPR032675 -
Ssu6g2189 1086 SUPERFAMILY RNI-like 293 660 - -
Ssu6g2189 1086 Pfam Protein kinase domain 761 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2189 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Ssu6g2189 1086 SUPERFAMILY RNI-like 82 396 - -
Ssu6g2189 1086 Gene3D Ribonuclease Inhibitor 603 691 IPR032675 -
Ssu6g2189 1086 PANTHER LRR RECEPTOR-LIKE KINASE 3 1054 - -
Ssu6g2189 1086 SMART serkin_6 758 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2189 1086 ProSitePatterns Protein kinases ATP-binding region signature. 764 787 IPR017441 GO:0005524
Ssu6g2189 1086 Gene3D Transferase(Phosphotransferase) domain 1 837 1053 - -
Ssu6g2189 1086 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1054 - -
Ssu6g2189 1086 PRINTS Leucine-rich repeat signature 622 635 - -
Ssu6g2189 1086 PRINTS Leucine-rich repeat signature 408 421 - -
Ssu6g2189 1086 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Ssu6g2189 1086 Gene3D Phosphorylase Kinase; domain 1 731 836 - -
Ssu6g2189 1086 SUPERFAMILY Protein kinase-like (PK-like) 738 1033 IPR011009 -
Ssu6g2189 1086 Pfam Leucine rich repeat 604 657 IPR001611 GO:0005515
Ssu6g2189 1086 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Ssu6g2189 1086 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2189 Ssu-Chr6 46695997 46699701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2189 24 1072 Receptor kinase-like Gene Family AT5G56040 47.295 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu6g2189 Pkinase 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2189 - - gmx:100814382 1953.33