Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2184 ATGGCCAAGATGCTGTGCCTCTTGCTCATGATTGGAGCAATGTTGTTTGGTGTTGGAGCTGAGCCAGTGGAAGATAAACAAGCATTGCTTGATTTCCTTCACAAGATTAACCACTCTCATCTTCTCAACTGGGATAAGAACTCTTCTGTGTGCAAAAGGTGGATAGGAGTGACCTGCAACACTGACCAATCCCAAGTTATAGCCCTCCAACTAACTAGAGCTGGATTGAGGGGTCCAATCCCACCTAACACTCTTAGTCGTCTCTCAGCACTCCAAACTGTGAGTCTTGCATCAAATGGCATAACTGGTtatttcccttctggtttctcTCAGCTAAAGAATCTGATCTATCTCTATCTCCAATTCAACAATTTTTCTGGTCCATTGCCATCAGACTTTTCAGTTTGGAAGAATCTTAGTATTGTCAATTTATCCAACAATTCTTTCAATGGGAGCATCCCATTTTCACTTTCAAATTTGACTCATCTCGCTTCTTTAGTCCTAGCCAACAACTCTCTTTCAGGTGAAATTCCTGATCTCAATATCCCTACCCTGCAAGGGCTGAATTTTGCCAACAATAACCTTAGTGGGGTTGTGCCTAAATCCCTTGAGAGATTTCCAAGTGGGGCATTTTCTGGTAACAATCTTACATATTCATATGCACTTCCCCCTTCTTTCCATGTTCAACCCCCAAATCCTCATCCAACAAGGAAAAAATCCAAAGGACTTAGGGAACCAGCATTGTTGGGTATCATCATTGGTTGTTGTGTGCTGGGACTTGCAGTAATAGCAGCTTTTGTGATTGTGTGGCGCTATGAGAAAGGTGGAGAAGATGGACAACAAGTAAAGTACCAGAAAAGAGAAGTCTCTAAGAAAACAGAAGGTTCTGAAAGTCGAGACAAgaacaaaattgttttctttgagGGTTGCAATCTTGCATTTGACTTGGAGGACTTGTTGAGAGCATCTGCTGAGGTGCTTGGAAAGGGCACGTTTGGGACAGTGTATAAGGCTGCTCTGGAAGATGCAACAACGGTGGTGGTGAAAAGGTTGAAGGATGTCACAGTTGGAAAACGCGAGTTTGAACAGCAGATGGAGATGGTGGGGAGGATTAGGCATGACAATGTGGCTGCACTAAGGGCATATTACTACTCAAAGGAGGAGAAACTTATGGTATATGATTACTACGAACAGGGCAGTGTCTCTGCAATGTTGCATGGCAAAAGAGGGGGAGGCAGAATTATTTAG 1248 0.4207 MAKMLCLLLMIGAMLFGVGAEPVEDKQALLDFLHKINHSHLLNWDKNSSVCKRWIGVTCNTDQSQVIALQLTRAGLRGPIPPNTLSRLSALQTVSLASNGITGYFPSGFSQLKNLIYLYLQFNNFSGPLPSDFSVWKNLSIVNLSNNSFNGSIPFSLSNLTHLASLVLANNSLSGEIPDLNIPTLQGLNFANNNLSGVVPKSLERFPSGAFSGNNLTYSYALPPSFHVQPPNPHPTRKKSKGLREPALLGIIIGCCVLGLAVIAAFVIVWRYEKGGEDGQQVKYQKREVSKKTEGSESRDKNKIVFFEGCNLAFDLEDLLRASAEVLGKGTFGTVYKAALEDATTVVVKRLKDVTVGKREFEQQMEMVGRIRHDNVAALRAYYYSKEEKLMVYDYYEQGSVSAMLHGKRGGGRII 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2184 415 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Ssu6g2184 415 ProSitePatterns Protein kinases ATP-binding region signature. 327 358 IPR017441 GO:0005524
Ssu6g2184 415 Gene3D Ribonuclease Inhibitor 23 229 IPR032675 -
Ssu6g2184 415 Pfam Protein tyrosine and serine/threonine kinase 325 408 IPR001245 GO:0004672|GO:0006468
Ssu6g2184 415 Gene3D Phosphorylase Kinase; domain 1 285 395 - -
Ssu6g2184 415 PANTHER LRR RECEPTOR-LIKE KINASE 5 414 - -
Ssu6g2184 415 ProSiteProfiles Protein kinase domain profile. 321 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2184 415 PANTHER OS05G0588300 PROTEIN 5 414 - -
Ssu6g2184 415 SUPERFAMILY L domain-like 35 208 - -
Ssu6g2184 415 SUPERFAMILY Protein kinase-like (PK-like) 325 410 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2184 Ssu-Chr6 46422862 46424669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2184 14 414 Receptor kinase-like Gene Family AT4G23740 52.392 1.33e-136 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g2184 PK_Tyr_Ser-Thr 9.9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2184 - - gmx:100810095 715.687